Prírodovedecká fakulta

Vlasta Demečková, Petra Hradická, Petra Adamková

Practical Immunology is a basic text aimed at students of PF UPJŠ in Košice who study Biology need a comprehensive overview of the methodology of immunology. While studying Biology, students need to thoroughly understand not only the basics of each discipline, but also to acquire practical skills, including the ability to design scientific experiments, select adequate analytical techniques as well as to interpret and present experimental data. The aim of this new publication is therefore to provide master's degree students with practical reference study material that will support and expand their knowledge of the basic principles of Immunology

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Vladislav Kolarčik

Flow cytometry is a diagnostic and research technique that enables rapid analysis of cells, nuclei and organelles of plants and other organisms. In plant biology, it is most often used for DNA content analysis in a wide range of applications. It is the method of first choice and its importance is even increasing compared to competing technologies. It is unrivaled in speed, accuracy, repeatability and low cost. Flow cytometry has become a standard tool in laboratories focused on biological-ecological plant research. This textbook provides information on the historical development of flow cytometry and its establishment in the analysis of the plant genome. It describes the procedure of sample analysis to determine the nuclear DNA content and presents the basic applications, such as determination of genome size, ploidy level and reproduction modes of plants and determination of endopolyploidy level in plant tissues. These college textbooks are intended for students, teachers and anyone interested in the use of flow cytometry in scientific work with plant cells.

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Mária Kožurková

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Božena Mihalíková • Ondrej Hutník • Jozef Kiseľák 

The textbook is devoted to the mathematical analysis of infinite series of numbers and functions. It is intended for students of mathematics, physics and computer science, as well as interdisciplinary study of combination with mathematics. It contains a theoretical background for investigating the convergence of infinite series, expanding functions into power and Taylor series, as well as the use of these results in various problems of mathematics, physics, and computer science. Using the historical background the textbook clarifies the motivations and the need to introduce some key concepts and their further development. Basic concepts and statements are demonstrated on a large number of solved exercises, but it contains a number of exercises for independent practice. Several results are supplemented by dynamic animations executable in the electronic version of the textbook.

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Jana Shepa (ed.)

The book of abstracts from the second year of the international conference Spring electrochemical meeting is composed of contributions from the participants of this student conference. The conference consisted of one invited lecture and ten competing student lectures. The message of this meeting is to create a dialogue between students of electrochemistry and the mutual exchange of knowledge. All contributions are professionally processed and inspiring.

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Ján Guniš - Ľubomír Šnajder

Prílohy

College scripts Programming in Python 1 are intended for future teachers of computer science. The content of the course is related to the teaching of programming in Scratch and is an introduction to text-based programming in Python.

Programming is introduced as a means of developing problem-solving skills. The first chapter is devoted to problem solving. The next 12 chapters sequentially introduce basic language constructions, data structures, and selected types of algorithms. Each of these chapters begins with an introduction to the problem. This section is primarily intended for self-study, to prepare students for the exercises. The following subchapter summarizes and completes the knowledge, and additional insights and approaches related to the chapter topic are presented. The chapters include a collection of exercises designed to practice and deepen knowledge and skills on the topic.

The final part of the chapter presents the solved problems. This section serves as a guide to solving the problems in the collection.

i

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Vladimír Komanický

The aim of this textbook is to acquaint students in physics, chemistry and material science on both undergraduate and graduate level, with the techniques used to prepare micro-electromechanical devices, nanoobjects and nanostructures using the so called top down methodologies. The is no requirement for this course to pass any prior courses. The introduction part of the text defines the forces that affect nanoobjects and the interactions between them. Reader can understand in detail why properties of nanomaterials and nanostructures are so different when comprared to their macroscopic counterparts. Text gives also an overview of thin film preparation technologies as precursors for the preparation of nanostructures. The main emphasis in Volume I is on conventional lithographic technologies for the preparation and shaping of nanostructures, methods for characterization of thin films, nanoparticles and nanomaterials. Unconventional lithographic methods will also be discussed in the prepared upcoming Volume II. Student will also get acquainted with the applications of nanostructures in research focused on nanophysics, nanocatalysis and nanoelectronics. The textbook is used as a study material for the course ÚFV / MPN / 14 - Methods of preparation and characterization of nanostructures. Part of the course is also a laboratory exercise in which the student gets acquainted with the techiques used for the preparation and characterization of thin films and top-down technologies used for the preparation of nanostructures.

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Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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Pavol Mártonfi

The university textbook deals with the latest knowledge from the systematics of vascular plants in a clear manner. Vascular plants arose in the Silurian period in the Paleozoic, when the first primitive plants moved from water to dry land, which required evolutionary progress in the morphological and anatomical structure of these plants. During about 420 million years of the existence of vascular plants, several of their main groups have evolved: the spore vascular plants, including the lycopods (branch Lycopodiophyta) and group of ferns and related plants (branch Monilophyta), and the seed plants, including gymnosperms (branch Gymnospermae) and angiosperms ( Angiospermae), which currently dominate among plants. The textbook provides a brief but comprehensive overview of the main groups, orders and families of plants with their description, distribution, main representatives, while also addressing the useful properties of selected species. The work is complemented by an overview of the system of plants by Cronquist, Tachtadžjan, APG and an overview of the families of the Slovak flora, as well as a taxonomic index.

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Pavol Sokol - Ladislav Bačo - Tomáš Bajtoš

In the university textbook, we present the theoretical foundations and technical details of the activities of a forensic investigator. We describe the identification and provision of digital tracks, file system analysis. analysis of various artifacts of the Windows operating system, analysis of the operating memory. The textbook is also supplemented by a chapter devoted to the analysis of malicious code (malware). University textbooks are intended for students of bachelor's, master's, engineering and doctoral study programs in computer science, but also in non-informatics fields.

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Monika Tvrdoňová, Miroslava Martinková

The scientific book of abstracts from conference „Novel Trends in Chemistry, Research and Education 2022“ is a summary of the contributions of conference participants, which contain the original results of their scientific and research activities. The contributions published in this volume can be divided according to content into the field of analytical, inorganic, organic, physical chemistry, biochemistry, didactics of chemistry and NMR spectroscopy.

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Stela Csachová, Ján Kaňuk - Alena Gessert, Ladislav Novotný, Štefan Gábor,Jozef Šupinský

This book addressed the inquiry-based learning and teaching with the support of geospatial technologies. Today, geospatial technologies are influencing geography teaching learning, particularly in secondary education. Theoretical framework gives the reader the insight to inquiry-based learning, with special focus on inquiry in geography. The one-by-one step of inquiry is analysed in detail. The major part of the book presents the eleven models of geography lessons, representing the subject content of physical, human and regional geographies, various levels of inquiry and use of different geospatial technologies. The readers are acquainted with the use of geographic information system (particularly Google Earth and ArcGIS online), web portals, webGIS, open data, mobile applications and new forms of 3D cartographic visualisation (virtual reality, 3D print, dynamic 3D map) in teaching geography. The lesson models were tested with the students to be geography teachers in school year 2021/2022. This books serves as resource mainly for undergraduate teacher students and in-service geography teachers.

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Mária Vilková,Monika Garberová, Michal Goga

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Jozef Strečka

Over the past fifteen years, the course on ’Exactly Solvable Models in Statistical Physics’ has become an indispensable ground of the study programme ’Theoretical Physics’ at Faculty of Science of Pavol Jozef ˇSaf´arik University in Koˇsice. At first, the course based on the first edition of this textbook was intended for undergraduate students only, however, I have later prepared follow-up course taught at a postgraduate level on demand of several ambitious students who wished to continue in studying this exciting research field. It is already more than decade when our students enrolled in the study programme ’Theoretical Physics’ graduate from ’Introduction to Exactly Solvable Models in Statistical Physics’ at a master level and ’Exactly Solvable Models in Statistical Physics’ at a postgraduate level. Of course, it was necessary somehow to rearrange topics for the courses of undergraduate and postgraduate students. More specifically, a few more challenging topics concerned with exact solutions of 2D Ising model (chapter 3) were moved to a more advanced course intended for the postgraduate students, while an introductory course intended for the undergraduate students was contrarily supplemented with a few new topics requiring the second edition of this textbook. The second edition of this textbook thus contains a completely new chapter 4 devoted to the exact solution of the Ising model on the Bethe lattice using the method of exact recursion relations, while the chapter 5 was supplemented by exact results for ground state of a few frustrated Heisenberg spin models using the variational method. It is my hope that the next edition of this textbook will come soon and it will involve all topics specifically taught within the postgraduate course as well. 

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Jana Shepa (ed.)

The book of abstracts from 6th International Conference on Nanomaterials: Fundamentals and Applications, NFA 2022 is composed of contributions from the participants of this international conference. The conference consisted of 4 invited lecture and 52 abstracts of participants. The conference is focused on nanotechnology and its application in various research areas. All contributions are professionally processed and inspiring.

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Milan Žukovič

This textbook is intended for master's degree students and is a follow-up to the Computational Physics I course studied at the bachelor's level. The content of the textbook Computational Physics II focuses on stochastic methods of solving physical problems, mainly on Monte Carlo (MC) simulation of many-particle systems. The focus on this computationally intensive approach is motivated by the gradual increase in the computing capacities of ordinary computers as well as the introduction of high-performance computing clusters. This has led to significant progress in the development of new simulation techniques, thanks to which MC simulations have found application in various areas of research and application practice. Considering the main research focus of the department, this text is particularly devoted to the presentation of basic and more advanced MC simulation techniques applied to a simple Ising spin model in order to investigate its magnetic, thermodynamic and critical properties. The next part is devoted to MC simulations of random processes. It focuses on the simplest but also the most basic random walk process and demonstrates its applications in financial analysis and the solution of a quantum system described by the time-dependent Schrödinger equation. The last part is dedicated to the basics of molecular dynamics, applied to simulating the classical movement of atoms in a given force field. By mastering the problems addressed in this course, students will obtain a potential tool for working out of their diploma theses, or a methodology useful for their further scientific and research practice in the field of investigating of complex systems. The lectured topic is subsequently exercised in the form of preparing projects implemented in the freely distributable software Octave, which is easy on the user's programming skills and which students have the opportunity to familiarize themselves with in the previous study.

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Jozef Bednarčík

Crystallography deals with discerning the arrangement and bonding of atoms in crystalline solids. Almost immediately after their discovery, X-rays began to be used to study the internal structure of substances. The first chapter of this textbook deals with the basic concepts of crystallography. At the beginning, crystalline solids are characterized. In the next section, the basic types of bonds and their characteristics are briefly presented. The main subject of this chapter is the interpretation of basic concepts such as symmetry operations, translational periodicity, grid, elementary cell. Spatial lattices and crystal systems are presented. At the end of this chapter, attention is paid to the description of individual types of defects in crystal structures. In the second chapter, the Bohr model of the hydrogen atom is presented. Individual quantum numbers and their meaning are given. Next, energy levels and allowed transitions within an atom with multiple electrons are described. The second chapter concludes with the characterization of the basic absorption and emission processes. The third chapter is devoted to the production of X-ray radiation and its properties. Sources of X-ray radiation and a description of their operation are presented. Interaction of X-ray radiation with matter, absorption and detection of X-ray radiation are the subject of the last part of this chapter.

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Jozef Bednarčík (ed.)

The SFEL school is continuation of the Winter Schools of Synchrotron radiation held in 2011, 2013, 2014 and SFEL 2017, 2018 and 2019. All schools of the series were held here, in Liptovský Ján, where our conference venue offers conditions for friendly and creative atmosphere. The aim of the SFEL 2022 school is to facilitate the growth of a new Slovak research community with high expertise in the area of high-efficiency RTG laser, synchrotron and neutron sources. The SFEL school is designed for efficient transfer of the rapidly developing know-howin these areas to young generation – researchers and university students. The next aim of the SFEL2022 is strengthening of personal connections between the local Slovak research community and actually forming scientific teams of XFEL users, scientific teams of synchrotron or neutron sources users, respectively. Slovak research community thus can take advantage of the fact that Slovakia is a shareholder of the European XFEL GmbH company in Hamburg, but also makes more efficient use of other closely related scientific facilities, including ILL and ESRF in Grenoble and DESY in Hamburg.

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Peter Kollár

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Marián Kireš  (ed.)

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Katarína Kimáková

The textbook is intended for university students who are preparing for the profession of biology teacher. The structure of the book is similar to an encyclopedia, with one page devoted to each content item, but the topics of the chapters and subchapters follow each other. The explanatory text on the page illustrates the diagram and there are notes and links to other sources of information. For better orientation, the content of the textbook is divided into 8 sections, which cover several chapters. It follows the general didactics, which it connects with the teaching of biological content. The book provides a basic orientation in the approaches to learning this subject, and also explains the relationship between biology as a science and the didactics of biology. It deals with teaching standards and curricula, advises on how to master biological concepts and understanding, how to communicate with students in biology classes, when and why are effective visual and practical methods. It acquaints the reader with the issue of setting goals for biological education in the cognitive, psychomotor and affective areas in relation to formative and summative assessment. Hopeful as well as experienced teachers will find in this publication not only a look into the history of teaching biology, but also a look into the future. Current trends in biology teaching, the connection of teaching with digital technologies, the virtual learning environment and interactive simulations and models belong to science lessons today.

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Ivana Šišoláková - Radka Gorejová - Jana Shepa - Renáta Oriňaková

The university textbook "Advanced Electrochemical Methods" is a teaching aid intended for master's or doctoral students studying electrochemical subjects at the Department of Physical Chemistry, Faculty of Science, Pavol Jozef Šafárik University in Košice. These textbooks follow and further develop textbooks focused on the basic electrochemical methods currently used in modern research. The presented teaching texts are processed in sixteen clear chapters, where they provide a theoretical principle and derivation of electrochemical processes and mechanisms in individual methods. Teaching texts also consist of practical laboratory exercises, in which students can try out the real application of the studied electrochemical methods. The practical tasks are focused primarily on the demonstration of research that is carried out at our workplace. Students will be able to try, for example, electrochemical modification of the electrode surface, preparation of electrochemical sensors for the determination of analytes, preparation and characterization of a dye-sensitized solar cell or electrochemical evolution of hydrogen.

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Janetta Nestorová Dická

The university handbook Elementals of Population Geography and Demography - Part I, as an introduction to population studies, is primary study material for students of the geography study program, as well as for students of the Information Systems in Public Administration study program at the Pavel Jozef Šafárik University in Košice, but also for the wider public interested in about population phenomena and their spatiality. Among other things, the handbook offers the latest population reports in the world and its regions. The aim of the handbook is to introduce young geographers to the basics of population research, which includes the most frequently used tools and methods in geographic analysis. The first part of the handbook contains an introduction to the scientific disciplines of population geography and demography with an overview of basic sources of demographic data. The next part discusses the issue of anthropogenesis, i.e. the development of humans from our ancestors and the spatial spread of humans across our Earth. Part of this part is the recent development of the world population and changes in the size and distribution of the global population over time. The last part analyses how the population is distributed in the world and in relation to the geographical components of the space.

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Alena Gessert

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Renáta Oriňaková

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Ján Füzer

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Jozef Strečka,Katarína Karľová

The 48th Conference of the Middle European Cooperation in Statistical Physics (MECO48) will be held on May 22nd-26th, 2023, in Stará Lesná, High Tatras, Slovakia. The MECO48 conference continues a long tradition of regular international meetings in the domain of statistical physics established in the early 1970s with the aim of bridging the gap between the communities of scientists from the Eastern and Western parts of Europe separated by the iron curtain. In the modern era the MECO conferences attract attention of the community of scientists who are active in the field of statistical physics including various interdisciplinary applications to biology, medicine, geography, finance, quantum information theory, and machine learning. The MECO48 conference is organized jointly by Faculty of Science of Pavol Jozef Šafárik University in Košice, Institute of Experimental Physics of Slovak Academy of Sciences in Košice, Institute of Physics, Slovak Academy of Sciences in Bratislava and Faculty of Humanities and Natural Sciences, University of Prešov under the financial support of Slovak Research and Development Agency (grant No. APVV-20-0150) and other sponsors.

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Michal Hnatič, Tomáš Lučivjanský

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Tomáš Samuely

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Adriana Zeleňáková - Jozef Bednarčík

Recenzovaný zborník príspevkov z vedeckej konferencie NANOVIR

Hlavným cieľom vedeckej konferencie NANOVIR bola prezentácia vedeckých výsledkov, získaných počas riešenia projektu NANOVIR – Nanočastice pre riešenie diagnosticko- terapeutických problémov s COVID-19, spolufinancovaného z Európskeho Fondu Regionálneho Rozvoja v Operačnom Programe Integrovaná Infraštruktúra 2014 – 2020, ITMS: 313011AUW7. Projekt bol riešený v období 1.1.2021 – 30.6.2023 a bol podporený sumou 1 916 004,79 EUR. Spolupodieľali sa na ňom tri spoluriešiteľské organizácie: Univerzita Pavla Jozefa Šafárika v Košiciach ako hlavný riešiteľ, Univerzita veterinárskeho lekárstva a farmácie v Košiciach ako partner č. 1 a Ústav experimentálnej fyziky Slovenskej akadémie vied ako partner č. 2.

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Miroslav Almáši

The scientific book of abstracts from the conference „Novel Trends in Chemistry, Research and Education 2023“ is a summary of the contributions of conference participants, which contain the original results of their scientific and research activities. The contributions published in this volume can be divided according to content into the fields of analytical, inorganic, organic, physical chemistry, biochemistry, didactics of chemistry, and NMR spectroscopy.

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Juraj Ševc - Anna Alexovič Matiašová

U študentov jednoodborového a medziodborového štúdia biológie na fakultách s prírodovedným zameraním veľakrát vzniká pri štúdiu predmetu Anatómia človeka problém s definovaním rozsahu učiva. Predložený študijný materiál si kladie za cieľ zorientovať študentov nelekárskych vedných odborov v rozsiahlej anatomickej terminológii a ohraničiť množstvo požadovaných anatomických pojmov na optimum, aby študentom ostala popri osvojení si latinského názvoslovia dostatočná kapacita aj na zapamätanie ďalších poznatkov z oblasti systémovej, porovnávacej, vývinovej a funkčnej anatómie. Dôraz na usporiadanie jednotlivých anatomických termínov do logických celkov zároveň podporuje hierarchický pohľad na architektúru ľudského tela. Napriek zdanlivej samoúčelnosti sa tak anatomická terminológia stáva kostrou, na ktorú študent v priebehu ďalšieho štúdia nabaľuje vedomosti z viac alebo menej príbuzných vedných odborov študujúcich ľudské telo  a procesy, ktoré v ňom prebiehajú. Zároveň popri tejto ambícii presahujúcej rámec vedného odboru anatómie, nadväzujú Anatomické termíny na dlhú tradíciu anatomických repetitórií s rešpektovaním platného latinského a slovenského anatomického názvoslovia.

Skriptum predstavuje praktický doplnok ku vysokoškolským učebniciam Anatómie alebo Neuroanatómie a najmä k anatomickému atlasu, rozhodne však nemá ambíciu ich nahradiť. Nájdete tu pohromade všetky potrebné termíny, ktoré môžete mať vždy poruke vo svojom telefóne, čítačke alebo notebooku. Dôraz na usporiadanie jednotlivých anatomických termínov do logických celkov podporuje hierarchický pohľad na architektúru ľudského tela a zaradenie krátkeho úvodu ku každej sústave Vás má podnietiť k vyhľadaniu ďalších, podrobnejších informácii o stavbe a funkcii danej orgánovej sú-stavy.

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