BIOLÓGIA LIŠAJNÍKOV. Časť C: Identifikácia metabolitov pomocou NMR spektroskopie

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Gabriela Andrejková - Ľubomír Antoni

Machine learning addresses the issues of how computer programs recognize complex patterns and make decisions based on data. In these university textbooks, we focus on theoretical knowledge in the field of machine learning in which we present the creation of concepts for objects, the preparation of concepts, hypotheses and the process of learning from examples. We describe Boolean formulas and their representations, probabilistic learning, linear and logistic regression, linear modeling and classification. Clustering and the Bayesian approach to machine learning conclude this publication.

University textbooks are intended for students of master's degree programs in computer science.

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Jozef Strečka

The present textbook deals with exactly solved models and their diverse applications in several branches of physics such as mathematical physics, statistical physics, condensed matter physics and so on. Exactly soluble models are currently considered as an inspiring research field in its own right, which regrettably requires a considerable knowledge of sophisticated mathematics. Accordingly, my primary ambition was to provide an intro- ductory course for undergraduate students that would cover the simplest exactly solved models, whose rigorous solutions are available even after modest calculation. The present textbook should be therefore regarded as an auxiliary graduate-level textbook, which should serve as the student’s guide on this beautiful but surely intricate subject.

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Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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Norbert Kopčo

Neuroscience is an interdisciplinary field of science at the interface of biological, psychological and computer sciences, which aims to describe the functioning of the brain and mind. Computational and cognitive neuroscience are subfields of neuroscience focused on the study of information processing in the human and animal nervous systems, and on the theoretical description of the brain and mind. This university textbook contains several assignments that provide an overview of the methods used in computational and cognitive neuroscience, with an emphasis on mathematical modeling and on the behavioral study of cognitive processes. The textbook builds on the author's previous works.

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Beáta Valkay ed.
Ivana Slepáková-Andrej Mock a kol.

The publication EFFUSE – River Landscape, Volume 2: Guidelines for Experts, developed within the EFFUSE project, is intended for professionals in the field of environmental sciences. It provides recommendations for research in river landscapes and highlights their importance for understanding ecological processes. The text presents bioindicators as a key tool for assessing landscape health and biodiversity conservation. A dedicated section explains why studying river landscapes as natural laboratories is essential. The publication also includes a practical manual for the Olympus DSX-1000 High End Model microscope, expanding opportunities in scientific education and research. In this way, it combines theoretical guidelines with modern technologies that enhance environmental knowledge.

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E-publication

Jozef Strečka-Katarína Karľová

The proceedings include the programme and abstracts of the workshop Magnetic Cooling and Frustrated Magnetism, held in Košice on October 27–29, 2025. The event is organized with the support of the French National Research Agency (ANR), the Faculty of Science of Pavol Jozef Šafárik University in Košice, and the Slovak Research and Development Agency. The workshop focuses on current challenges in quantum physics, particularly frustrated magnetism and magnetic cooling. Participants will present original research results that may significantly contribute to the development of future quantum technologies.

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Jana Shepa (ed.)

The book of abstracts from the second year of the international conference Spring electrochemical meeting is composed of contributions from the participants of this student conference.

The conference consisted of one invited lecture and ten competing student lectures. The message of this meeting is to create a dialogue between students of electrochemistry and the mutual exchange of knowledge. All contributions are professionally processed and inspiring.

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Danica Sabolová

This university textbook is intended for students of the Faculty of Science of the University of Applied Sciences in Košice who have enrolled in practical exercises in Biotechnology, but also for all other students who are interested in learning about the practical applications of biotechnology.

The aim of the practical course is to familiarize students with basic biotechnological methods and their applications. The students will verify in practice the theoretical knowledge acquired in the Biotechnology lectures such as the course of fermentation processes, wine production, preparation of fermented milk products and cheese, preparation of culture media, inoculation and cultivation of microorganisms, etc. The practical exercises also include the use of analytical and spectral methods, which are an integral part of biochemistry.

The scripts are published only in electronic form and are available on the University's website: http://kosice.upjs.sk/~kbch/sk, for the reason that it will always be possible to update and modernize the content of the laboratory exercises.

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Erik Čižmár

The textbook "Special Practicum II" is dedicated to describing experimental methods used for studying the magnetic properties of solid materials, especially low-dimensional and molecular magnets. It subsequently contains instructions for the practical exercise "Special Practicum II," during which master's and doctoral students use state-of-the-art commercial equipment-an electron paramagnetic resonance (EPR) spectrometer and a SQUID magnetometer.

The introductory chapter briefly describes the origin of magnetism in solids, the role of the crystal field, and magnetic interactions in explaining their magnetic properties. This is followed by an explanation of the principles of EPR, the operation of the EPR spectrometer, and the optimization of its parameters for the specific practical exercise.

The next part of the textbook is devoted to an overview of the behavior of magnetic quantities with changes in magnetic field or temperature in various types of magnets. The textbook concludes with a description of the operating principle of the SQUID magnetometer and an example of its use in a practical exercise measuring the magnetic moment.

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Adriana Zeleňáková

Magnetic nanoparticles are extremely interesting magnetic objects that still hide much that is undiscovered, both because of their physical properties and because of their diverse applications. Iron nanoparticles, or iron oxides, are used in medical diagnostics for magnetic resonance imaging, in the treatment of hyperthermia, and an important application is the use of magnetic particles for targeted drug delivery.

The textbook "Magnetic Nanoparticles: Nanomagnetism, Preparation and Advanced Applications" is intended primarily for students of the Master's programme in Physics and students of related disciplines at universities and faculties with a physical, chemical, metallurgical and biophysical focus. The motivation for writing this textbook was to develop study material that would contribute to improving the quality of teaching in the profile subject Nanomaterials and Nanotechnology at the Institute of Physical, Faculty of Sciences, UPJŠ, in the Master's programme Condensed Matter Physics, as well as in the profile subject in the PhD programme Advanced Materials.

The university textbook is divided into eight chapters. The first and second chapters are devoted to basic information about magnetism, the origin of nanomagnetism in nanoparticles and surface phenomena. The third and fourth chapters are devoted to nanomagnetism in nanoparticle systems. The fifth chapter describes in detail individual protocols for investigating the phenomenon of superparamagnetism and the phenomenon of superspin glass using the SQUID device. The sixth chapter describes individual procedures for the preparation of magnetic nanoparticles and the seventh chapter describes individual experimental techniques for the study of magnetic nanoparticles. The final eighth chapter describes the applications of nanoparticles in biomedicine.

During the writing of this textbook, the chapters were prepared using the foreign-language specialist literature listed in the recommended reading list.

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Mária Vilková - Zuzana Kudličková - Aneta Salayová - Tomáš Ján Liška

The Nuclear Magnetic Resonance Practicum – Part 1: Quantitative NMR is designed for students taking the NMR Practicals course, which focuses on the practical aspects of quantitative nuclear magnetic resonance (qNMR). This publication builds on previous NMR courses and assumes basic theoretical knowledge of the method, emphasizing experimental procedures, data processing, and result interpretation. qNMR is a precise analytical technique with broad applications in analytical chemistry, pharmaceutical research, biomedicine, and quality control. The script provides a detailed guide to conducting experiments, as well as procedures for analyzing and evaluating acquired data. This publication offers students methodological guidance and support in mastering qNMR analysis and serves as a valuable resource not only during their studies but also for further research in NMR spectroscopy.

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Erik Bruoth - Juraj Šebej - Ľubomír Antoni

In these university-level textbooks, we present the fundamental concepts of networks and graph theory. We explore breadth-first and depth-first graph searching. We present static and dynamic network models. We describe the issue of detecting overlapping and non-overlapping communities in directed and undirected networks. Various approaches to anomaly detection in networks also form an important part of this textbook. The final chapter is dedicated to spectral clustering, which plays a significant role in data mining in network graphs for various application domains.

These textbooks are suitable for first and second-year university students in computer science programs. The study materials are also suitable for students in non-computer science fields, with the aim of improving their knowledge and practical experience in computer science-related areas, and provide an opportunity for students to find employment in IT companies to solve practical tasks.

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Vasyl Cherlinka - Michal Gallay - Yuryi Dmytruk

The textbook is a practical guide to predictive mapping of soil types and properties in R. It bridges digital soil mapping theory with hands-on practice, covering the full workflow from data acquisition and preprocessing to validation and uncertainty quantification. Early chapters introduce the tidyverse ecosystem and the sf and terra packages for spatial data handling. Subsequent parts address modelling of categorical variables (soil types/WRB) and continuous variables (soil organic carbon) using Random Forest, Cubist, and Quantile Regression Forests. Step-by-step code examples show training/testing, feature selection, accuracy metrics, and model interpretation. Reproducibility and cartographic best practice are emphasised. A Slovakia case study demonstrates real-world application while outlining limits and generalisability. The book targets bachelor’s, master’s, and PhD students in geography, geoinformatics, environmental and agricultural sciences, as well as practitioners. Written in English, it fits international courses and mobility programmes.

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 Mária Kožurková - Martin Putala 

Cieľom tejto knihy je spracovať názvoslovné zásady a pravidlá, podľa ktorých sa tvoria slovenské názvy biochemických zlúčenín. Táto monografia je po dlhšom čase prvým pokusom o spracovanie tohto problému, a preto dúfame, že bude pomôckou a prínosom nielen pre študentov a učiteľov ale aj vedeckých pracovníkov. Poslúži aj študentom stredných škôl, ktorí majú záujem o biochémiu a molekulovú biológiu. Kniha obsahuje najnovšie názvoslovie, zásady a pravidlá pri tvorbe názvov biochemických zlúčenín. Kniha plne aplikuje odporúčania spoločnej komisie Medzinárodnej únie pre teoretickú a aplikovanú chémiu (IUPAC) a Medzinárodnej únie pre biochémiu a molekulárnu biológiu (IUBMB) so zahrnutím aktuálnych úprav názvoslovia, stereochémie a grafického znázornenia štruktúr podľa IUPAC. 

Autori

E-book

Adriana Zeleňáková - Jozef Bednarčík

Peer-reviewed Proceedings of the Scientific Conference NANOVIR

The main objective of the scientific conference NANOVIR was the presentation of scientific results obtained during the implementation of the NANOVIR project – Nanoparticles for solving diagnostic and therapeutic problems with COVID-19, co-financed by the European Regional Development Fund within the Operational Programme Integrated Infrastructure 2014 – 2020, ITMS: 313011AUW7.

The project was carried out from January 1, 2021, to June 30, 2023, and was supported with a sum of EUR 1,916,004.79. Three co-investigating organizations participated in the project: Pavol Jozef Šafárik University in Košice as the main investigator, the University of Veterinary Medicine and Pharmacy in Košice as partner no. 1, and the Institute of Experimental Physics of the Slovak Academy of Sciences as partner no. 2.

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Ondrej Krídlo

University textbooks present the basics of knowledge systems, which are divided into two parts. The first part of the publication is devoted to the basis of Formal Concept Analysis, ie the method of data analysis, knowledge representation and information processing, which is based on the formalization of the concept. In the second part we deal with the basics of logic programming, procedural semantics of logic programming, ie programs - theories, questions, SLD-derivation, SLD-tree, search strategies.

University textbooks are intended for students of master's degree programs in computer science.

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