Cvičenia z biochémie mikroorganizmov

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Danica Sabolová

This university textbook is intended for students of the Faculty of Science of the University of Applied Sciences in Košice who have enrolled in practical exercises in Biotechnology, but also for all other students who are interested in learning about the practical applications of biotechnology.

The aim of the practical course is to familiarize students with basic biotechnological methods and their applications. The students will verify in practice the theoretical knowledge acquired in the Biotechnology lectures such as the course of fermentation processes, wine production, preparation of fermented milk products and cheese, preparation of culture media, inoculation and cultivation of microorganisms, etc. The practical exercises also include the use of analytical and spectral methods, which are an integral part of biochemistry.

The scripts are published only in electronic form and are available on the University's website: http://kosice.upjs.sk/~kbch/sk, for the reason that it will always be possible to update and modernize the content of the laboratory exercises.

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Renáta Oriňáková (ed.)

Book of abstract

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Vlasta Demečková - Petra Hradická - Petra Adamková

The learning material for the course Practice in Immunology is based on several years of experience with teaching this subject, but mainly to provide students from the Biology Department at the Faculty of Natural Sciences, UPJŠ in Košice with sufficient theoretical background for practical exercises. It also serves as a scientific diary for detailed recording of all experimental data necessary for preparing laboratory protocols from individual exercises.

In studying biology, it is essential that students thoroughly understand not only the basics of each discipline but also acquire practical skills, including designing scientific experiments, selecting appropriate analytical/investigative techniques up to interpreting and presenting experimental data. The goal of this new publication is therefore to provide master's students with a practical study guide that supports and expands their knowledge about basic immunology principles.

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Tomáš Samuely

Today, scanning probe microscopes are standard tools in materials science, physics, chemistry, biology, and engineering. Thousands of these microscopes are in operation worldwide and are at least as common and popular as scanning electron microscopes.

Despite the vast number of newer scanning probe microscopy techniques, classical STM remains a significant and irreplaceable method, widely used, for example, in solid-state research. In this text, we will focus on both traditional and innovative STM techniques that are available and utilized in the laboratories of the Center for Low Temperature Physics in Košice.

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Zuzana Vargová - Miroslav Almáši - Juraj Kuchár - Jana Dinajová 

The script „Základné laboratórne praktikum z anorganickej chémie“ builds on previous editions of the script, with some thematic units updated and supplemented with new knowledge, principles, and detailed work procedures.

This script is intended as a teaching aid for first-year students of the chemistry and interdisciplinary study programs at the Faculty of Science, Pavol Jozef Šafárik University in Košice. The introductory part of the volume acquaints students with safety regulations that they should follow during work in a chemical laboratory. Subsequently, in five chapters, basic laboratory techniques are described in detail, which students will use in the further part of the practices for preparing inorganic compounds. These chapters are enriched with illustrative images created using the freely distributable ACDFreeLabs 10 program or taken from literature listed at the end of the script. Some images were created by the authors, and others were taken from the catalog of Fisher Slovakia, s.r.o., which provided written permission for their use. The chapters describing the preparation of inorganic compounds are organized according to their composition, from simple elements or molecules, through binary compounds, acids, and salts, to complex compounds.

Within this subject, students should apply their theoretical knowledge gained during lectures on General Chemistry and Inorganic Chemistry and thereby acquire basic practical experience and skills that they will use in further studies.

The last two chapters were developed based on cooperation with Duslo a.s., Production Plant Strážske, which participates in the innovation of practical teaching through direct involvement of experts from practice as part of the KEGA project No. 008UPJŠ-4/2018.

Authors

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Katarína Cechlárová - Eva Pitoňáková (eds.)

Proceedings of Abstracts from Contributions by Participants of the Student Scientific Conference at the Faculty of Science, UPJŠ in Košice, Held on April 26, 2017

This is the fifth edition of the proceedings from the Student Scientific Conference (ŠVK) at the Faculty of Science, Pavol Jozef Šafárik University in Košice. We are pleased that ŠVK has become an integral part of faculty life and a showcase for the quality of education provided. In 2017, ŠVK took place as part of the traditional Science Days on April 26, 2017. 105 students from the Faculty of Science presented their work. Contributions were organized into 15 sections, supplemented by an open programming competition involving 17 students and the final round of the IHRA competition, which included 27 teams from across Slovakia.

The abstracts in this proceedings demonstrate that students at the Faculty of Science, UPJŠ, acquire knowledge and skills in their field not only through theoretical study of disciplines but also through active engagement in solving partial scientific problems aligned with research goals at the faculty’s institutes. These abstracts also provide an overview of the faculty’s scientific activity, which we believe will be of interest to the broader public.

doc. RNDr. Gabriel Semanišin, PhD.

Dean of the Faculty

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Renáta Oriňaková(ed.)

Trends in chemistry, research and education at Faculty of Sciences of P.J. Šafárik University Košice

November 4, 2016, Faculty of Natural Sciences, Pavol Jozef Šafárik University, Košice, Slovakia

Organized by:
Faculty of Natural Sciences
Pavol Jozef Šafárik University in Košice
Slovak Chemical Society

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Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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Ľubomír Antoni-Stanislav Krajči

An important part of theoretical computer science is the problem of Turing machines. This computational model has two basic properties: like any other computational program, the software of a Turing machine is composed of instructions, but in its case they are all of a single type. Every other (so far known) computer program can be transformed into a Turing machine program without loss of information. While the second feature reduces the question of what a calculator cannot do to the question of what a Turing machine cannot do, the first feature allows a much simpler investigation of such a question. Using this computational model, we can thus find concrete problems that no automaton can ever deal with (perhaps the most famous is the problem of the Turing machine stopping). Their existence demonstrates the fundamental limitations of (not only ideal) computational means, and thus encourages both criticality and humility in our thinking.

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Erik Sedlák - Rastislav Varhač -  Patrik Danko - Helena Paulíková - Dušan Podhradský

The presented scripts were created in an effort to update and especially clarify the tasks that are solved in the basic practical exercises in biochemistry students of the 2nd and 3rd year of the bachelor's degree in chemistry, biology and their combinations with other disciplines. Most of the tasks come from the original scripts "Podhradský, Mihalovová: Praktické cvičenia z biochémie, Košice 1989".

Some of them have been modified to a greater or lesser extent and adapted to current conditions in the laboratory. New tasks were also added, such as those dedicated to nucleic acids. The scripts are thematically divided into six separate units, each of which consists of several tasks. The names of the units correspond to the nature of the biomacromolecules, which form their central theme. Theoretical introductions at the beginning of the unit are newly constructed and their main goal is to provide a brief overview of the basic biochemical methods used in the study of biomacromolecules.

These scripts are intentionally only available in electronic form. The reason is the effort to continuously update and modernize individual tasks according to the changing possibilities of our laboratory. We hope that the scripts will fulfill their role and that students will have sufficient theoretical knowledge and practical skills in the field of basic biochemical methods after completing these laboratory exercises.

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Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

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Erik Bruoth - Juraj Šebej - Ľubomír Antoni

In these university-level textbooks, we present the fundamental concepts of networks and graph theory. We explore breadth-first and depth-first graph searching. We present static and dynamic network models. We describe the issue of detecting overlapping and non-overlapping communities in directed and undirected networks. Various approaches to anomaly detection in networks also form an important part of this textbook. The final chapter is dedicated to spectral clustering, which plays a significant role in data mining in network graphs for various application domains.

These textbooks are suitable for first and second-year university students in computer science programs. The study materials are also suitable for students in non-computer science fields, with the aim of improving their knowledge and practical experience in computer science-related areas, and provide an opportunity for students to find employment in IT companies to solve practical tasks.

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Ondrej Krídlo

University textbooks present the basics of knowledge systems, which are divided into two parts. The first part of the publication is devoted to the basis of Formal Concept Analysis, ie the method of data analysis, knowledge representation and information processing, which is based on the formalization of the concept. In the second part we deal with the basics of logic programming, procedural semantics of logic programming, ie programs - theories, questions, SLD-derivation, SLD-tree, search strategies.

University textbooks are intended for students of master's degree programs in computer science.

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Adriana Zeleňáková - Jozef Bednarčík

Peer-reviewed Proceedings of the Scientific Conference NANOVIR

The main objective of the scientific conference NANOVIR was the presentation of scientific results obtained during the implementation of the NANOVIR project – Nanoparticles for solving diagnostic and therapeutic problems with COVID-19, co-financed by the European Regional Development Fund within the Operational Programme Integrated Infrastructure 2014 – 2020, ITMS: 313011AUW7.

The project was carried out from January 1, 2021, to June 30, 2023, and was supported with a sum of EUR 1,916,004.79. Three co-investigating organizations participated in the project: Pavol Jozef Šafárik University in Košice as the main investigator, the University of Veterinary Medicine and Pharmacy in Košice as partner no. 1, and the Institute of Experimental Physics of the Slovak Academy of Sciences as partner no. 2.

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Martin Orendáč

The textbook is designed to prepare students who will engage in the experimental study of the properties of condensed matter. It demonstrates that a contemporary experimental physicist must not only possess sufficiently detailed knowledge of the physical processes occurring within the object under study but also understand the methods for creating the experimental conditions in which the experiment is conducted. Active knowledge of the functioning of the entire experimental setup can be of fundamental importance in the implementation or potential modification of the measurement methodology used.

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Peter Paľove-Balang

The text ‘Uptake and transport of mineral substances in plants’ in Slovak language provides a general overview of the uptake and distribution of substances in an easy-to-understand form.

The individual chapters introduce students to the properties of the soil environment, which have a significant influence on the availability of substances, as well as the transport of substances across membranes and over medium and long distances. The text contains the latest findings from the English literature, supplemented by diagrams and graphs created by the author on the basis of his own research or by compiling several sources.

The text is intended primarily for students of a master's degree in biology or ecology and assumes at least a basic knowledge of plant physiology.

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