Počítačová fyzika I

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Janka Vrláková - Stanislav Vokál

Atómová a jadrová fyzika sú pomerne mladé vedecké disciplíny tvoriace záverečnú časť všeobecného kurzu fyziky na PF UPJŠ. Ich cieľom je výklad podstaty základných fyzikálnych vlastností atómov, atómového jadra a elementárnych častíc.
To je aj obsahom prednášok a cvičení „Všeobecná fyzika IV“ v 2. ročníku bakalárskeho stupňa štúdia fyziky na Prírodovedeckej fakulte (PF) Univerzity P.J. Šafárika (UPJŠ) v Košiciach. Na ne nadväzujú voliteľné prednášky „Jadrové žiarenie v životnom prostredí“, „Úvod do fyziky mikrosveta“ v 3. ročníku bakalárskeho stupňa jednoodborového štúdia fyziky, príp. učiteľského štúdia fyziky v kombinácii s iným predmetom a „Subjadrová fyzika“ v 1. ročníku magisterského stupňa učiteľského štúdia fyziky v kombinácii s iným predmetom. V spomenutých prednáškach sú predstavené najnovšie experimentálne poznatky o štruktúre a chovaní mikrosveta pomocou fyzikálnych teórií a ich nasledujúcej experimentálnej previerke v experimente.
Hlbšie pochopenie tohto rozsiahleho materiálu by mal umožniť aj tento vysokoškolský učebný text „Základné fyzikálne praktikum III“, ktorého prvá časť je pred Vami. Tieto skriptá obsahujú základné úlohy z praktika jadrovej fyziky realizované na Katedre jadrovej a subjadrovej fyziky (KJSF) PF UPJŠ v posledných rokoch v zimnom semestri na bakalárskom stupni štúdia fyziky, či už jednoodborovom, alebo v kombinácii s iným predmetom. Predložené učebné texty predstavujú prepracovanie a doplnenie starších skrípt (M. Karabová a kolektív, Základné fyzikálne praktikum, PF UPJŠ, 1984) používaných na KJSF doteraz.

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Vladislav Kolarčik

Flow cytometry is a diagnostic and research technique that enables rapid analysis of cells, nuclei and organelles of plants and other organisms. In plant biology, it is most often used for DNA content analysis in a wide range of applications. It is the method of first choice and its importance is even increasing compared to competing technologies. It is unrivaled in speed, accuracy, repeatability and low cost. Flow cytometry has become a standard tool in laboratories focused on biological-ecological plant research.

This textbook provides information on the historical development of flow cytometry and its establishment in the analysis of the plant genome. It describes the procedure of sample analysis to determine the nuclear DNA content and presents the basic applications, such as determination of genome size, ploidy level and reproduction modes of plants and determination of endopolyploidy level in plant tissues. These college textbooks are intended for students, teachers and anyone interested in the use of flow cytometry in scientific work with plant cells.

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Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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Peter Fedoročko (eds.)

From June 14 to June 17, 2022, the 8th annual Spring School for Doctoral Students at Pavol Jozef Šafárik University in Košice will take place in Liptovský Ján. The scientific program of the spring school will comprise 3 plenary lectures by leading scientific experts and 1 workshop. Doctoral students will present their research papers in two sections: 22 doctoral students of Faculty of Public Administration, Faculty of Law and Faculty of Arts, and 26 doctoral students of Faculty of Medicine and Faculty of Science. The scientific programme of the spring school will also include a panel discussion with the management of Pavol Jozef Šafárik University in Košice.

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Katarína Štrofeková

Cell Biophysics II is the one semester comprehensive course textbook for PhD students. It encompasses basic principles and mechanisms underlying cell physiology and biophysics with aims:

• General knowledge of the principles of cellular function, including membrane, cytoplasmic and nuclear roles in normal and abnormal conditions.
• In-depth understanding of the mechanisms underlying the cell functions at the molecular and subcellular level.
• Awareness of cell pathologies that lead to specific disease symptoms and phenotypes.
• The ability to apply learned principles to solve new problems (analysis & synthesis).

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Peter Fedoročko a kol. 

Vysokoškolský učebný text Prírodovedeckej fakulty UPJŠ.

Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

E-book

Jozef Kováčik

Tieto „Návody na cvičenia“ prezentujú stručný prehľad bežne používaných metodík i progresívne metodiky napr. s použitím kvapalinovej chromatografie a fluorescenčného mikroskopu. Jednotlivé úlohy sa selektovali na základe výskumného zamerania Katedry botaniky PF UPJŠ v Košiciach z hľadiska „stresovej fyziológie“. Niektoré úlohy je tiež možné využiť v rámci predmetu „Ekológia rastlín“. Ako modelová rastlina pre jednotlivé úlohy sa typicky používa rumanček kamilkový z dôvodu dlhoročnej histórie jeho výskumu na Katedre botaniky PF UPJŠ a jeho nenáročnosti na kultiváciu v laboratórnych podmienkach. Jednotlivé kapitoly prezentujú aj stručný význam sledovaných parametrov, princíp stanovenia a metabolizmus (vznik alebo odbúravanie) s cieľom naznačiť ich vzájomný kontext, keďže stanovenie individuálneho parametra nemôže poskytnúť všeobecnejšiu výpoveď o celkových príčinách a dopadoch pozorovanej zmeny (ale naopak, môže poskytnúť predpoklad pre preverenie hypotézy na úrovni iných parametrov...). Pre hlbšie štúdium jednotlivých problematík existuje dostatok kvalitných zahraničných monografií a prehľadových (tzv. „review“) článkov. 

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Martin Bačkor • Miriam Bačkorová

The presented text is devoted to the history of biology, medicine and pharmacy studies, as scientific disciplines, from ancient time, Middle age, and modern era. In the text are chronologically arranged the most important representatives of the history of the study of biological scientific disciplines, the basic characteristics of significant historical discoveries and the reassessment of their significance from the point of view of contemporary science of the 21st century.

Authors

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Adela Kravčáková - Stanislav Vokál - Janka Vrláková 

The presented “General Physics IV, Part 1: Atomic Physics” is intended as a basic study material for lectures from General Physics IV in the second year of bachelor-level study of physics and interdisciplinary study in combination with physics at the Faculty of Science, P. J. Šafárik University in Košice. The content covers the first part of the given course of physics, devoted to atomic physics.

The aim of the course is to obtain basic information about the structure of the atom and the electron shell of the atom.

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Andrea Morovská Turoňová

The discovery of radioactivity at the turn of the 19th and 20th centuries stimulated the rapid development of nuclear sciences. At the interface between nuclear physics and chemistry, disciplines such as radiochemistry, radiation chemistry and nuclear chemistry were formed. The aim of the Nuclear Chemistry course which is taught at the PF UPJŠ is to provide basic knowledge, with an emphasis on the general value of the subject. It is important to make available the basics of various methods, techniques and their specifics in the application of nuclear phenomena in chemistry and related fields. Emphasis is also placed on the use of correct terminology, knowledge of the context of relationships and basic principles, supplemented by illustrative concrete cases. The choice of material is rather difficult, but we count on additional monographs and textbooks to fill in the gaps of these teaching texts.

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E-book

Martin Orendáč

Učebnica má slúžiť na prípravu študentov, ktorí sa budú venovať experimentálnemu štúdiu vlastností kondenzovaných látok. Ukazuje sa, že súčasný experimentálny fyzik musí mať nielen dostatočne podrobné vedomosti o fyzikálnych procesoch odohrávajúcich sa v objekte, ktorý je predmetom štúdia, ale aj o spôsoboch vytvorenia experimentálnych podmienok, v akých sa experiment uskutočňuje. Aktívna znalosť spôsobu činnosti celej experimentálnej zostavy môže mať zásadný význam pri implementácii resp. potenciálnej úprave používanej meracej metodiky.

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Jozef Strečka- Katarína Karl’ová (eds.)

Zborník obsahuje program a abstrakty workshopu s názvom: 1st Workshop on Perspective Electron Spin Systems for Future Quantum Technologies, ktorý sa bude konať 28.-29. júna 2022 v Košiciach. Workshop je organizovaný Prírodovedeckou fakultou Pavla Jozefa Šafárika v Košiciach a Ústavom experimentálnej fyziky Slovenskej akadémie vied v Košiciach s finančnou podporou Agentúry na podporu výskumu a vývoja. Ústrednými témami konferencie budú súčasné problémy kvantovej fyziky - kvantovej teórie magnetizmu spinových a elektrónových štruktúr, exotických kvantových spinových stavov, kvantového previazania, kvantových fázových prechodov, topologického kvantového počítania a kvantového spracovania informácie. Účastníci workshopu budú prezentovať originálne pôvodné výsledky svojho výskumu, ktoré môžu zásadným spôsobom ovplyvniť vývoj budúcich kvantových technológií.   

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Zuzana Vargová - Miroslav Almáši - Juraj Kuchár - Jana Dinajová 

The script „Základné laboratórne praktikum z anorganickej chémie“ builds on previous editions of the script, with some thematic units updated and supplemented with new knowledge, principles, and detailed work procedures.

This script is intended as a teaching aid for first-year students of the chemistry and interdisciplinary study programs at the Faculty of Science, Pavol Jozef Šafárik University in Košice. The introductory part of the volume acquaints students with safety regulations that they should follow during work in a chemical laboratory. Subsequently, in five chapters, basic laboratory techniques are described in detail, which students will use in the further part of the practices for preparing inorganic compounds. These chapters are enriched with illustrative images created using the freely distributable ACDFreeLabs 10 program or taken from literature listed at the end of the script. Some images were created by the authors, and others were taken from the catalog of Fisher Slovakia, s.r.o., which provided written permission for their use. The chapters describing the preparation of inorganic compounds are organized according to their composition, from simple elements or molecules, through binary compounds, acids, and salts, to complex compounds.

Within this subject, students should apply their theoretical knowledge gained during lectures on General Chemistry and Inorganic Chemistry and thereby acquire basic practical experience and skills that they will use in further studies.

The last two chapters were developed based on cooperation with Duslo a.s., Production Plant Strážske, which participates in the innovation of practical teaching through direct involvement of experts from practice as part of the KEGA project No. 008UPJŠ-4/2018.

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Erik Bruoth - Juraj Šebej - Ľubomír Antoni

In these university-level textbooks, we present the fundamental concepts of networks and graph theory. We explore breadth-first and depth-first graph searching. We present static and dynamic network models. We describe the issue of detecting overlapping and non-overlapping communities in directed and undirected networks. Various approaches to anomaly detection in networks also form an important part of this textbook. The final chapter is dedicated to spectral clustering, which plays a significant role in data mining in network graphs for various application domains.

These textbooks are suitable for first and second-year university students in computer science programs. The study materials are also suitable for students in non-computer science fields, with the aim of improving their knowledge and practical experience in computer science-related areas, and provide an opportunity for students to find employment in IT companies to solve practical tasks.

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