Praktické cvičenia z biochémie

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Marcel Uhrin - David Jandzik - Andrej Čerňanský - Michal Rindoš - Blanka Lehotská - Stanislav Danko - Ján Kautman - Peter Mikulíček - Peter Urban - Daniel Jablonski

Bibliographies provide basic scientific information, illustrate quality and intensity of research in a particular topic, area, or time, and thus help build a cultural-historical perspective of society’s appreciation of knowledge and education. Here we provide a bibliography of herpetological research in the region of Slovakia between the years 1791 and 2017. We collected 2,183 references authored by 1,453 different authors and covering all species of amphibians (18) and reptiles (13) occurring in Slovakia and, in addition, amphibian and reptile taxa occurring in 94 other countries.

Most of the contributions were published in popular magazines and non-indexed journals, while only about 12% of all references represent scientific articles from journals indexed in relevant scientific databases. The extensiveness of study on amphibians and reptiles has varied among different periods within the selected time frame. However, an obvious intensification in the field of herpetology can be observed, especially during the second half of the 20th century. While there have only been few professionals specialized in herpetology, an important role in promoting the research and conservation of amphibians and reptiles in Slovakia has been played by non-governmental organizations and hobbyists. The most frequent type of herpetological data in the referenced literature comes from faunistic research, followed by conservation and general information on herpetofauna, with the majority of published articles in indexed journals coming from the fields of palaeontology, phylogeography, and population genetics.

The presented bibliography is the first step towards building a solid base for future systematic herpetological research in the country and Central Europe.

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Mária Reháková 

Vysokoškolský učebný text určený pre poslucháčov vyšších ročníkov z bioanorganickej chémie. Štúdium bioanorganickej chémie si vyžaduje vedomosti z predchádzajúcich chemický disciplín nižších ročníkov - všeobecnej, anorganickej, organickej, fyzikálnej chémie a biochémie.

Autorka

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Mária Kožurková

These university textbooks are intended for first-year master's degree students at the Faculty of Natural Sciences of UPJŠ in Košice. The scope and content of the works included in these scripts are primarily based on time and spatial constraints, taking into account the material demands of the tasks.

The aim of these scripts is to teach students basic microbiological techniques and to show them the importance of microorganisms in everyday life and their crucial role in nature. The exercises are designed to enhance students' technical skills and teach them to work according to safety principles.

The text is divided into 13 parts. Each part begins with an introduction to the theory related to the practice topic. The appendix includes a proposal for the preparation of protocols for individual exercises.

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Marián Kireš  (ed.)

Proceedings of Abstracts from the Student Scientific Conference of the Faculty of Science, Pavol Jozef Šafárik University in Košice

The Student Scientific Conference (SSC) represents the culmination of long-term and intensive work on a selected topic, collaboration with a supervisor, or a broader team at the workplace. In practice, however, it often marks the beginning of scientific research, focusing on a chosen subject, field, or close cooperation with a future supervisor of a bachelor's, master's, or doctoral thesis.

This year, the Student Scientific Conference took place on April 19, 2023, featuring 14 sections, a programming competition, and the IHRA contest. Bachelor’s and master’s students presented 101 contributions. Additionally, 8 high school students participated non-competitively, presenting their SOČ projects; 14 students took part in the programming competition, and 3 students competed in the IHRA contest.

We believe that the proceedings of abstracts and related documents serve not only as an archive but also as a dignified presentation of scientific activities at our faculty for the wider public.

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E-publication

Denisa Maceková-Monika Václavková-Marek Kvet-Ivana Sotáková

The publication Digiform: A Supporting Application to Digilib – User Guide, Part B presents the Digiform web application as a tool that extends the functionality of the Digilib digital library of formative assessment tools. The application enables the creation and editing of formative assessment tool templates, which can be adapted to the specificities of individual subjects and levels of education and subsequently imported into the Digilib environment for use in the teaching process. The guide provides a detailed description of how to work with the Digiform application, from creating new templates, editing and personalising them, through to their export and implementation in the main Digilib application. Attention is also given to the interconnection with the Digilib Images application, which enables the integration of visual elements into the assessment tools, thereby enhancing their didactic effectiveness and visual appeal. The guide is intended for teachers at all levels of education, student teachers, school administrators, and digital coordinators who are interested in the systematic use of the Digilib digital library to support the implementation of formative assessment, enhance the quality of the educational process, and foster the development of students’ self-assessment and reflective competences.

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Katarína Cechlárová (ed.)

This year, the Student Scientific Conference was held on April 24, 2019, across 17 sections in disciplines such as biology and ecology, chemistry, physics, geography, mathematics, informatics, and their didactics. Bachelor’s and master’s students presented a total of 124 contributions. The most successful participants advanced to national or traditional Czech-Slovak student scientific showcases in fields like physics, chemistry, mathematics, informatics, and mathematics didactics.

In addition to faculty students, 10 high school students participated outside the competition. They were invited based on their achievements in subject-specific Olympiads or because they were already engaged with the faculty under the guidance of dedicated teachers in laboratory work as part of their preparation for future studies. The day also featured a programming competition with 23 participants, an IHRA contest involving 16 teams of high school students and 15 teams from elementary schools, and a new Puzzle section where 72 high school students from the region competed.

The abstracts from the Student Scientific Conference demonstrate that our faculty's students not only absorb theoretical knowledge delivered in lectures but also actively engage in solving partial scientific problems that align with research objectives at the institutes of PF UPJŠ. This collection serves as both a record of scientific activity at the faculty and a dignified presentation for the broader public.

Prof. RNDr. Katarína Cechlárová, DrSc.

Vice-Dean for Education

Doc. RNDr. Gabriel Semanišin, PhD.

Dean of the Faculty

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Jozef Kováčik

These "Exercise Manuals" present a concise overview of commonly used methodologies as well as progressive techniques, such as the use of liquid chromatography and fluorescence microscopy. Individual tasks were selected based on the research focus of the Department of Botany at the Faculty of Science, Pavol Jozef Šafárik University in Košice, particularly in the context of "stress physiology."

Some tasks can also be utilized within the subject "Plant Ecology." Chamomile (Matricaria chamomilla) is typically used as a model plant for individual tasks due to its long-standing history of research at the Department of Botany and its ease of cultivation under laboratory conditions. The chapters also briefly discuss the significance of monitored parameters, principles of their determination, and metabolism (formation or degradation), aiming to indicate their mutual context.

This approach highlights that determining an individual parameter cannot provide a general explanation for the overall causes and impacts of observed changes; however, it can serve as a basis for testing hypotheses at the level of other parameters.

For deeper study of specific issues, there is an abundance of high-quality international monographs and review articles available.

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Jozef Strečka- Katarína Karl’ová (eds.)

Zborník obsahuje program a abstrakty workshopu s názvom: 1st Workshop on Perspective Electron Spin Systems for Future Quantum Technologies, ktorý sa bude konať 28.-29. júna 2022 v Košiciach. Workshop je organizovaný Prírodovedeckou fakultou Pavla Jozefa Šafárika v Košiciach a Ústavom experimentálnej fyziky Slovenskej akadémie vied v Košiciach s finančnou podporou Agentúry na podporu výskumu a vývoja. Ústrednými témami konferencie budú súčasné problémy kvantovej fyziky - kvantovej teórie magnetizmu spinových a elektrónových štruktúr, exotických kvantových spinových stavov, kvantového previazania, kvantových fázových prechodov, topologického kvantového počítania a kvantového spracovania informácie. Účastníci workshopu budú prezentovať originálne pôvodné výsledky svojho výskumu, ktoré môžu zásadným spôsobom ovplyvniť vývoj budúcich kvantových technológií.   

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Jana Shepa (ed.)

The book of abstracts from 7th International Conference on Novel Materials: Fundamentals and Applications, NFA 2023 is composed of contributions from the participants of this international conference. The conference consisted of 3 invited lecture and 40 abstracts of participants. The conference is focused on novel materials and its application in various research areas. All contributions are professionally processed and inspiring.

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Janka Vrláková - Stanislav Vokál

Atomic and nuclear physics are relatively young scientific disciplines forming the final part of the general physics course at the Faculty of Physics of the Jagiellonian University. Their aim is to explain the nature of the basic physical properties of atoms, atomic nucleus and elementary particles.

This is also the content of the lectures and exercises ‘General Physics IV’ in the 2nd year of the Bachelor's degree in Physics at the Faculty of Natural Sciences (PF) of the P.J. Šafárik University (UPJŠ) in Košice. They are followed by optional lectures ‘Nuclear Radiation in the Environment’, ‘Introduction to the Physics of the Microworld’ in the 3rd year of the Bachelor's degree of single-discipline study of physics, or teacher study of physics in combination with another subject, and ‘Subnuclear Physics’ in the 1st year of the Master's degree of teacher study of physics in combination with another subject.

In the aforementioned lectures, the latest experimental findings on the structure and behaviour of the microworld are presented by means of physical theories and their subsequent experimental verification in experiments.

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Rastislav Varga

The movement of domain walls in ferromagnetic materials is utilized in various magnetic devices for storing, processing, or transmitting signals and information. This mainly includes transformer cores, various sensors, memory devices (e.g., HDDs in PCs), as well as modern spintronic devices such as Racetrack memories, domain wall motion-based electronics, and so on.

This book is intended to serve as a textbook for advanced courses in the field of magnetic materials. It is primarily aimed at students interested in studying magnetic materials, as well as professionals from various fields who wish to understand the basics of domain structure and its changes. It is divided into nine chapters. The first chapter deals with a brief history of the study of domain structure in magnetic materials. The second chapter provides an introduction to the causes and manifestations of magnetic anisotropies. The third and fourth chapters are devoted to the causes of domain structure formation and domain walls. The fifth chapter discusses the structure of domain walls, their potential, and the critical field required for domain wall movement. The sixth chapter is dedicated to magnetization processes, one of which - domain wall movement - is discussed in detail in chapter 7. The eighth chapter contains a theoretical solution for domain wall movement. The final ninth chapter presents a modern method of domain wall movement induced by electric current.

The presented work assumes that the reader has at least basic knowledge in the field of magnetism. Otherwise, the author refers the reader to basic literature (e.g., [2.1 - 2.6]).

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Daniela Kladeková

This university text is intended for students of chemical and ecological sciences at the Faculty of Natural Sciences of the P. J. Šafárik University in Košice and is intended to serve as a tool for experimental exercises in colloid chemistry. Colloid chemistry is an important part of the theoretical basis of the chemical sciences and belongs to the newer interdisciplinary fields of natural sciences.

It combines knowledge from physical chemistry, physics and biology, while also drawing on a solid knowledge of mathematics and other scientific disciplines. Experiments are often essential in understanding the problems of colloid chemistry, modelling ideas about the phenomena and laws involved in the discipline. This is why active participation in experimental exercises is so important and essential to mastering the material in colloid chemistry.

In selecting the tasks for these scripts, it was also necessary to respect the considerable limitations imposed by the possibilities of the laboratory instrumentation and material equipment of our department. Despite this limitation, however, they can illustrate to students the basic theoretical physicochemical principles of colloid dispersion systems and, importantly, their understanding can contribute to the understanding of some of the more important peculiarities of colloidal phenomena.

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Valéria Skřivánková - Martina Hančová

The publication is focused on discrete random processes, primarily on Markov chains, which have wide application in the field of economics and finance.

The textbook is divided into five chapters, the first of which serves as an introduction to random processes and provides definition, properties and classification of random processes in general. The second chapter discusses Markov chains with discrete time, including valuation of transitions between states and their optimal management. The third chapter focuses on special Markov chains with continuous time and emphasizes construction and solution to the system of Kolmogorov differential equations, which describe the dynamics of the process development. The last two chapters illustrate applications of Markov chains using examples of queuing system modeling and renewal theory.

Besides the explanation of basic terms, definitions and theorems with proofs, this textbook also provides number of solved examples to illustrate the discussed theory. Problem assignments are placed at the end of each chapter, so that readers can test their understanding of the content as they progress through the book. Solutions to all the problems and the list of references are provided at the end of the publication.

This textbook is primarily intented for students majoring in Economics and Financial Mathematics at the Faculty of Science of Pavol Jozef Šafárik University in Košice, and it covers content of the course “Random Proceses 1“ thought there. It might however serve also students from other schools in similar progams or professionals interested in this topic.

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E-book

Vladislav Kolarčik

Flow cytometry is a diagnostic and research technique that enables rapid analysis of cells, nuclei and organelles of plants and other organisms. In plant biology, it is most often used for DNA content analysis in a wide range of applications. It is the method of first choice and its importance is even increasing compared to competing technologies. It is unrivaled in speed, accuracy, repeatability and low cost. Flow cytometry has become a standard tool in laboratories focused on biological-ecological plant research.

This textbook provides information on the historical development of flow cytometry and its establishment in the analysis of the plant genome. It describes the procedure of sample analysis to determine the nuclear DNA content and presents the basic applications, such as determination of genome size, ploidy level and reproduction modes of plants and determination of endopolyploidy level in plant tissues. These college textbooks are intended for students, teachers and anyone interested in the use of flow cytometry in scientific work with plant cells.

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E-book

Katarína Štrofeková

Cell Biophysics II is the one semester comprehensive course textbook for PhD students. It encompasses basic principles and mechanisms underlying cell physiology and biophysics with aims:

• General knowledge of the principles of cellular function, including membrane, cytoplasmic and nuclear roles in normal and abnormal conditions.
• In-depth understanding of the mechanisms underlying the cell functions at the molecular and subcellular level.
• Awareness of cell pathologies that lead to specific disease symptoms and phenotypes.
• The ability to apply learned principles to solve new problems (analysis & synthesis).

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E-book

Jozef Bednarčík

Crystallography deals with discerning the arrangement and bonding of atoms in crystalline solids. Almost immediately after their discovery, X-rays began to be used to study the internal structure of substances.

The first chapter of this textbook deals with the basic concepts of crystallography. At the beginning, crystalline solids are characterized. In the next section, the basic types of bonds and their characteristics are briefly presented. The main subject of this chapter is the interpretation of basic concepts such as symmetry operations, translational periodicity, grid, elementary cell. Spatial lattices and crystal systems are presented. At the end of this chapter, attention is paid to the description of individual types of defects in crystal structures. In the second chapter, the Bohr model of the hydrogen atom is presented. Individual quantum numbers and their meaning are given.

Next, energy levels and allowed transitions within an atom with multiple electrons are described. The second chapter concludes with the characterization of the basic absorption and emission processes. The third chapter is devoted to the production of X-ray radiation and its properties. Sources of X-ray radiation and a description of their operation are presented.

Interaction of X-ray radiation with matter, absorption and detection of X-ray radiation are the subject of the last part of this chapter.

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