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Úvod k praktikám k experimentálnym metódam biofyziky
The university textbook titled Laboratory Techniques and Calculations is designed for the first-year students of the bachelor's degree in Biophysics at the Institute of Physics, Faculty of Sciences, P. J. Šafárik University in Košice. The objective is to equip students with fundamental knowledge and practical skills for the work in a chemical laboratory. It is essential for addressing different biophysical issues and experiments that students will have to solve later. The textbook comprises three principal sections: a theoretical part focused on the calculations, a section dedicated to laboratory work, and the last part offers a brief introduction to spectroscopy. The theoretical part summarizes the basic definitions and equations related to the characterization and preparation of solutions and mixtures. The second, most comprehensive part provides guidance and suggestions for safe and efficient practices in a chemical laboratory. The primary focus is on the manipulation of chemical substances and the use of specific small laboratory instruments and equipment. The fundamental laboratory procedure guides for the selected laboratory works are also provided. As part of a short introduction to spectroscopy, students can become familiar with fundamental spectroscopic concepts and principles. UV-VIS absorption spectrophotometry receives special attention, along with a brief introduction to fluorescence. The textbook is supplemented by various practical and theoretical tasks, as well as numerous web links to further explanatory texts and videos.
Data sheet
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Vladimír Zeleňák (ed.)
The publication contains abstracts of contributions presented at the Student Scientific Conference of the Faculty of Natural Sciences at UPJŠ in Košice, held on April 25, 2013. The event was marked by the celebration of the 50th anniversary of the Faculty of Natural Sciences at UPJŠ and was part of a series of events called ScienceFest.
E-book
Erik Sedlák - Rastislav Varhač - Patrik Danko - Helena Paulíková - Dušan Podhradský
The presented scripts were created in an effort to update and especially clarify the tasks that are solved in the basic practical exercises in biochemistry students of the 2nd and 3rd year of the bachelor's degree in chemistry, biology and their combinations with other disciplines. Most of the tasks come from the original scripts "Podhradský, Mihalovová: Praktické cvičenia z biochémie, Košice 1989".
Some of them have been modified to a greater or lesser extent and adapted to current conditions in the laboratory. New tasks were also added, such as those dedicated to nucleic acids. The scripts are thematically divided into six separate units, each of which consists of several tasks. The names of the units correspond to the nature of the biomacromolecules, which form their central theme. Theoretical introductions at the beginning of the unit are newly constructed and their main goal is to provide a brief overview of the basic biochemical methods used in the study of biomacromolecules.
These scripts are intentionally only available in electronic form. The reason is the effort to continuously update and modernize individual tasks according to the changing possibilities of our laboratory. We hope that the scripts will fulfill their role and that students will have sufficient theoretical knowledge and practical skills in the field of basic biochemical methods after completing these laboratory exercises.
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Dušan Barabas - Alena Labunová
These study materials aim to provide basic information about biogeographical issues from a geographical perspective, i.e., a perspective focused primarily on the aspect of spatial differentiation of the biosphere. The basis for the division of the biosphere is its historical development, during which individual taxa and communities were formed.
The historical development of the biosphere did not occur under stable, constant conditions, but rather in ever-changing conditions caused by the position of our planet within the solar system, the position of the Earth's axis relative to the ecliptic, and also the position of the solar system within the galaxy. All changes in the Earth's position, together with the movement of continents (drift) and climate changes, created the prerequisites for the spatial expansion of the biosphere. The historical development of the biosphere, various perspectives, the hierarchical level of differentiation, and the causes of differentiation are incorporated in this study material, whose aim is to outline the basic principles of this division.
The goal is also to highlight certain differences in the understanding of terminology, as well as to point out some fundamental relationships operating within the landscape system in the broadest sense of the word. The section devoted to the ecological principles of the functioning and formation of the landscape system, according to MIČIAN and ZATKALÍK (1984), outlines the issues of understanding the terms ecosystem and geosystem. For this reason, the presented text includes chapters that attempt to explain the understanding and approach to some basic concepts.
These study materials are intended for students of single-subject, interdisciplinary, and supplementary studies as basic teaching material. By expanding the knowledge from this study material with further information, which is elaborated in more detail in the literature listed in the bibliography of this text, graduates will gain a comprehensive view of biogeographical issues.
Authors
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This textbook covers the fundamentals of phenomenological thermodynamics to the extent typically taught in standard theoretical physics courses at the undergraduate level in the Physics degree program. A slightly reduced scope is also taught in all interdisciplinary study programs combined with physics. In recent years, the time allocation for individual courses has been slightly reduced, which is reflected in our selection and coverage of topics.
Our primary aim was to provide a sufficiently solid explanation of the key concepts and laws of thermodynamics necessary for mastering further theoretical physics courses at the master's level (e.g., Statistical Physics, Condensed Matter Physics, Quantum Theory of Solids, Quantum Theory of Magnetism, etc.). The book also presents the essential minimum knowledge required for the study of further applications of thermodynamics in biophysics, biology, chemistry, and engineering disciplines.
Understanding individual sections, as well as the text as a whole, requires a grasp of the basic concepts of thermodynamics at the level of a General Physics course and knowledge equivalent to a standard university mathematics course. Each topic is treated with the utmost emphasis on conceptual clarity and mathematical rigor.
E-book
The concept of the integral is one of the most significant concepts in mathematics as a whole. In its most primitive form, it was already used by the ancient Greeks in the creation of Euclidean geometry. However, it was only after Descartes' work on analytical geometry in 1637 that mathematicians could begin to consider the integral as a subject of analysis. Descartes' work laid the groundwork for the discovery of infinitesimal calculus by Leibniz and Newton around 1665. At that time, a great dispute arose over the priority of this discovery, dividing scholars of Germany and England into two opposing camps, each favoring their own champion. Today, we know that Newton's work on fluxions and fluents was somewhat earlier, but Leibniz's notation and approach have gained more acceptance in the mathematical world, and the symbols ∫ ∫ and d d are still used today. A brief overview of the history of the integral will be presented in Chapter 1.
Today, there is a plethora of scripts, textbooks, and books dedicated to explaining the concept of the integral. Therefore, every potential author faces the initial question of whether to write another text on this topic. Our affirmative answer to this question was driven by the students' request to find the subject matter of a part of the winter semester of the second year presented in a coherent form. The second motivation is a slightly different approach to the topic. If we consider the methods typically used in solving problems and gaining routine with a certain integral, it mainly involves the Newton-Leibniz formula, and often there is little time left to compute the definite (Riemann) integral using its definition. Therefore, we included a discussion of the Newton integral in Chapter 2, which reflects this fact and is directly related to the indefinite integral, whose various calculation methods receive relatively much attention in the previous semester. Only after that, in Chapter 3, do we build the theory of the Riemann integral, present criteria for its existence, classes of integrable functions, basic properties, and finally its relationship with the Newton integral. Questions primarily concerning geometric applications are addressed in Chapter 4, and in the final chapter, we focus on extending the Riemann integral to unbounded functions and unbounded intervals.
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Today, scanning probe microscopes are standard tools in materials science, physics, chemistry, biology, and engineering. Thousands of these microscopes are in operation worldwide and are at least as common and popular as scanning electron microscopes.
Despite the vast number of newer scanning probe microscopy techniques, classical STM remains a significant and irreplaceable method, widely used, for example, in solid-state research. In this text, we will focus on both traditional and innovative STM techniques that are available and utilized in the laboratories of the Center for Low Temperature Physics in Košice.
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Crystallography deals with discerning the arrangement and bonding of atoms in crystalline solids. Almost immediately after their discovery, X-rays began to be used to study the internal structure of substances.
The first chapter of this textbook deals with the basic concepts of crystallography. At the beginning, crystalline solids are characterized. In the next section, the basic types of bonds and their characteristics are briefly presented. The main subject of this chapter is the interpretation of basic concepts such as symmetry operations, translational periodicity, grid, elementary cell. Spatial lattices and crystal systems are presented. At the end of this chapter, attention is paid to the description of individual types of defects in crystal structures. In the second chapter, the Bohr model of the hydrogen atom is presented. Individual quantum numbers and their meaning are given.
Next, energy levels and allowed transitions within an atom with multiple electrons are described. The second chapter concludes with the characterization of the basic absorption and emission processes. The third chapter is devoted to the production of X-ray radiation and its properties. Sources of X-ray radiation and a description of their operation are presented.
Interaction of X-ray radiation with matter, absorption and detection of X-ray radiation are the subject of the last part of this chapter.
Danica Studenovská a kol.
Táto zbierka úloh je určená poslucháčom Prírodovedeckej fakulty UPJŠ, ktorí sa v rámci predmetu Matematika I. zoznamujú s pojmami funkcie, limity, derivácie, integrálu a ich aplikáciami. Ide najmä o študentov nematematických odborov a učiteľských kombinácií, avšak táto zbierka je vhodná aj pre iných študentov a záujemcov o základy matematickej analýzy.
Autori
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Mária Vilková - Monika Garberová - Michal Goga
Nuclear Magnetic Resonance (NMR) is currently a widely used analytical tool that finds application in many fields of science and technology. The broadening of its practical use brings with it the necessity to create educational texts appropriate to the given scientific discipline.
This university textbook is intended for students of biology and serves as a supplement to the study materials for the advanced master's course "Biology of Lichens." At the same time, it represents a useful resource for master's and doctoral students involved in research, helping them interpret NMR spectra and present basic theoretical concepts.
The textbook briefly describes the important aspects of each NMR spectroscopic technique without delving excessively into the physical principles of individual methods or complex mathematical analyses. In this edition, the structures of lichen metabolites have been included, which students will isolate, purify, and identify using various analytical methods during practical exercises. An entire chapter is dedicated to a detailed description of solving the NMR spectra of isolated metabolites, with each step in elucidating the structures of both known and unknown metabolites explained in detail. The solved tasks are followed by numerous unsolved examples, including high-resolution 1D and 2D NMR spectra of metabolites, intended to further develop the acquired knowledge and skills of students and doctoral candidates in structure elucidation using NMR spectroscopy.
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Ivana Šišoláková - Radka Gorejová - Jana Shepa - Renáta Oriňaková
The university textbook "Advanced Electrochemical Methods" is a teaching aid intended for master's or doctoral students studying electrochemical subjects at the Department of Physical Chemistry, Faculty of Science, Pavol Jozef Šafárik University in Košice.
These textbooks follow and further develop textbooks focused on the basic electrochemical methods currently used in modern research. The presented teaching texts are processed in sixteen clear chapters, where they provide a theoretical principle and derivation of electrochemical processes and mechanisms in individual methods. Teaching texts also consist of practical laboratory exercises, in which students can try out the real application of the studied electrochemical methods.
The practical tasks are focused primarily on the demonstration of research that is carried out at our workplace. Students will be able to try, for example, electrochemical modification of the electrode surface, preparation of electrochemical sensors for the determination of analytes, preparation and characterization of a dye-sensitized solar cell or electrochemical evolution of hydrogen.
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The university textbook entitled: Host-guest and supramolecular chemistry provides basic information about this scientific field as well as the types of compounds that belong to it. It provides basic characteristics of non-bonded interactions as well as methods of characterization and classification for these compounds. It summarizes knowledge about various types of host-guest systems from the oldest such as Hofmann clathrates to inclusive compounds such as cyclodextrins and calixarenes. In addition to structural and synthetic information, which is supplemented with images, the textbook also addresses the possibilities of application or practical use of compounds. The conclusion of each chapter is supplemented with tasks for elaboration on a given topic.
E-book
The textbook "Bioenergetics" should serve as an introduction to the study of bioenergetics. This field of science is currently highly actual, as the results of the bioenergetics research in recent years clearly show that bioenergetics processes in living systems can "serve" not only to transformation of energy, but also affect the course of processes such as apoptosis, aging, origin and development of many diseases (especially neurodegenerative).
These facts clearly indicate the need for the existence of quality teaching texts that would allow students to acquire the necessary information and knowledge in this scientific discipline in an acceptable way. For the above mentioned reasons, we decided to create these textbooks, which are in the form of ten chapters, which naturally and logically follow each other.
E-publication
Beáta Valkay ed.
Ivana Slepáková-Monika Balogová a kol.
EFFUSE - Scientific Education for Advanced is an educational material designed for university students interested in ecological sciences, biology and environmental protection. The publication was developed as part of the EFFUSE project and focuses on the scientific investigation of living organisms in the river ecosystem, with an emphasis on their ecological role and importance as bioindicators. The river ecosystem is a dynamic environment where a wide range of organisms can be studied, from algae and phytoplankton to aquatic invertebrates, fish, amphibians and reptiles. This publication presents a detailed study of their adaptations, life cycles, reproductive strategies and their importance for ecological balance. Particular attention is paid to fish and amphibians, whose environmental demands and sensitivity to pollution make them important indicators of water quality and environmental status. The publication also provides guidance on how to integrate their study into university education in the form of practical research. It also includes a chapter on science education in the context of sustainable development, which is often absent from university curricula in Slovakia and Ukraine. This material promotes the link between theory and practice and develops students' scientific thinking in order to prepare them to meet the environmental challenges of the future.
E-book
Over the past fifteen years, the course on ’Exactly Solvable Models in Statistical Physics’ has become an indispensable ground of the study programme ’Theoretical Physics’ at Faculty of Science of Pavol Jozef Šafarik University in Košice. At first, the course based on the first edition of this textbook was intended for undergraduate students only, however, I have later prepared follow-up course taught at a postgraduate level on demand of several ambitious students who wished to continue in studying this exciting research field.
It is already more than decade when our students enrolled in the study programme ’Theoretical Physics’ graduate from ’Introduction to Exactly Solvable Models in Statistical Physics’ at a master level and ’Exactly Solvable Models in Statistical Physics’ at a postgraduate level. Of course, it was necessary somehow to rearrange topics for the courses of undergraduate and postgraduate students.
More specifically, a few more challenging topics concerned with exact solutions of 2D Ising model (chapter 3) were moved to a more advanced course intended for the postgraduate students, while an introductory course intended for the undergraduate students was contrarily supplemented with a few new topics requiring the second edition of this textbook.
The second edition of this textbook thus contains a completely new chapter 4 devoted to the exact solution of the Ising model on the Bethe lattice using the method of exact recursion relations, while the chapter 5 was supplemented by exact results for ground state of a few frustrated Heisenberg spin models using the variational method. It is my hope that the next edition of this textbook will come soon and it will involve all topics specifically taught within the postgraduate course as well.
Učebný text je určený poslucháčom medziodborového štúdia v kombinácii s matematikou, jednoodborového štúdia matematiky ako aj rozširujúceho štúdia matematiky. Je zameraný na základné poznatky o deliteľnosti celých čísel, kongruenciách a aritmetických funkciách.
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E-book
Martin Bačkor - Silvia Mihaličová (eds.)
Proceedings of the 11th Conference of Doctoral Students in Experimental Plant Biology and the 13th Conference on Experimental Plant Biology, Košice, September 9–13, 2013
13th Conference of Experimental Plant Biology (Sections)
11th Days of Doctoral Students in Experimental Plant Biology (Sections)
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