Biochemická terminológia

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Milan Žukovič

The textbook Computational Physics I covers the topics taught in the course of the same name at the bachelor's level of the Physics study program, as well as in the course Application of Numerical Methods at the bachelor's level of the Applied Informatics study program.

The text builds upon the basic course in numerical methods, focusing on explaining the fundamental principles of computer-based solutions to some typical physics problems. It includes both the area of deterministic methods for solving problems modeled by ordinary and partial differential equations, as well as the area of stochastic Monte Carlo simulations. The course Computational Physics I lays the foundation for further study of more advanced computational methods taught at the master's level in the subject Computational Physics II. Nowadays, the use of computers as a tool for solving real physics problems, and for students as a tool for preparing their final bachelor's or master's theses, is almost indispensable.

This has led to the creation of numerous user-oriented software packages in various environments for solving a wide range of problems. However, without a thorough understanding of how individual computational techniques work, these programs become black boxes with many pitfalls and risks in their use. Therefore, this text emphasizes understanding both the strengths and weaknesses of individual methods and the assumptions for their successful application.

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Jozef Bednarčík (ed.)

Pavol Jozef Šafárik University in Košice under the auspices of Ministry of Education, Research, Development and Youth of the Slovak Republic, Ministry of Economy of the Slovak Republic and European X-Ray Free-Electron Laser Facility GmbH in Hamburg organizes School of XFEL and Synchrotron Radiation Users 2024 (SFEL 2024). The school is continuation of the Winter Schools of Synchrotron radiation held in 2011, 2013, 2014 and SFEL 2017, 2018, 2019 and 2022. The aim of the SFEL2024 school is to facilitate the growth of new Slovak research community of high expertise in high-efficiency RTG laser and synchrotron and neutron sources. The SFEL school is designed for efficient transfer of the rapidly developing know-how in these areas to young generation – researchers and university students. The next aim of the SFEL2024 is strengthening of personal connections between the local Slovak research community and forming scientific teams of XFEL users. Slovak research community thus can take advantage of the fact that Slovakia is a shareholder of European XFEL GmbH Company in Hamburg, but also makes more efficient use of other closely related scientific facilities, including ILL and ESRF in Grenoble and DESY in Hamburg.

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Katarína Cechlárová - Eva Pitoňáková (eds.)

Proceedings of Abstracts from Contributions by Participants of the Student Scientific Conference at the Faculty of Science, UPJŠ in Košice, Held on April 26, 2017

This is the fifth edition of the proceedings from the Student Scientific Conference (ŠVK) at the Faculty of Science, Pavol Jozef Šafárik University in Košice. We are pleased that ŠVK has become an integral part of faculty life and a showcase for the quality of education provided. In 2017, ŠVK took place as part of the traditional Science Days on April 26, 2017. 105 students from the Faculty of Science presented their work. Contributions were organized into 15 sections, supplemented by an open programming competition involving 17 students and the final round of the IHRA competition, which included 27 teams from across Slovakia.

The abstracts in this proceedings demonstrate that students at the Faculty of Science, UPJŠ, acquire knowledge and skills in their field not only through theoretical study of disciplines but also through active engagement in solving partial scientific problems aligned with research goals at the faculty’s institutes. These abstracts also provide an overview of the faculty’s scientific activity, which we believe will be of interest to the broader public.

doc. RNDr. Gabriel Semanišin, PhD.

Dean of the Faculty

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Ivana Šišoláková - Radka Gorejová - Jana Shepa - Renáta Oriňaková

The university textbook "Advanced Electrochemical Methods" is a teaching aid intended for master's or doctoral students studying electrochemical subjects at the Department of Physical Chemistry, Faculty of Science, Pavol Jozef Šafárik University in Košice.

These textbooks follow and further develop textbooks focused on the basic electrochemical methods currently used in modern research. The presented teaching texts are processed in sixteen clear chapters, where they provide a theoretical principle and derivation of electrochemical processes and mechanisms in individual methods. Teaching texts also consist of practical laboratory exercises, in which students can try out the real application of the studied electrochemical methods.

The practical tasks are focused primarily on the demonstration of research that is carried out at our workplace. Students will be able to try, for example, electrochemical modification of the electrode surface, preparation of electrochemical sensors for the determination of analytes, preparation and characterization of a dye-sensitized solar cell or electrochemical evolution of hydrogen.

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Renáta Oriňaková

We have prepared a publication that focuses on the personalities of professors. These personalities represent entire scientific teams, participated in the creation of new study programs, and had a significant impact on the formation of the faculty. Factually, we tried to capture the basic data in a uniform structure. We are building on a similar publication from ten years ago, which greatly helped us, especially with professors who worked at the faculty many years ago and whose memories are gradually fading. The ambition of the publication is to contribute to the preservation of basic information that is closely related to the history of the faculty.

doc. RNDr. Roman Soták, PhD. Dean of the Faculty of Science, UPJŠ in Košice

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Adriana Zeleňáková - Jozef Bednarčík

Peer-reviewed Proceedings of the Scientific Conference NANOVIR

The main objective of the scientific conference NANOVIR was the presentation of scientific results obtained during the implementation of the NANOVIR project – Nanoparticles for solving diagnostic and therapeutic problems with COVID-19, co-financed by the European Regional Development Fund within the Operational Programme Integrated Infrastructure 2014 – 2020, ITMS: 313011AUW7.

The project was carried out from January 1, 2021, to June 30, 2023, and was supported with a sum of EUR 1,916,004.79. Three co-investigating organizations participated in the project: Pavol Jozef Šafárik University in Košice as the main investigator, the University of Veterinary Medicine and Pharmacy in Košice as partner no. 1, and the Institute of Experimental Physics of the Slovak Academy of Sciences as partner no. 2.

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Dušan Barabas a kol.

The presented text is the final product of work within the project "Tanuljunk egymástól!/Let’s Learn from Each Other!" The project emerged from long-standing contacts between the staff of the Centre for Regional Studies of the Hungarian Academy of Sciences and the Institute of Geography at the Faculty of Science, Pavol Jozef Šafárik University in Košice, as a natural effort to expand mutual cooperation. The first step was collaboration within Interreg II projects, involving a broad range of institutions from both academic and non-academic environments. This initial attempt was unsuccessful due to administrative errors. Consequently, a project titled HUSK/0801/1.6.1/0003 "Tanuljunk egymástól!/Let’s Learn from Each Other!" was prepared and developed in agreement with the Hungarian side. It was approved and co-financed by the European Regional Development Fund under the Hungary-Slovakia Cross-Border Cooperation Program 2007–2013.

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Mária Kožurková (ed.)

Book of Abstracts

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E-publication

Beáta Valkay ed.
Ivana Slepáková-Lenka Maliničová a kol.

The publication EFFUSE – Educational Materials for the Public was developed within the EFFUSE project and focuses on current environmental issues of river landscapes. It emphasizes the importance of water as an irreplaceable resource and the need to protect it. Special attention is given to bioindicators – organisms whose presence or absence reflects the state of the environment. Monitoring bioindicators makes it possible to detect ecosystem changes before serious damage occurs. The publication highlights that biodiversity is essential for ecosystem stability and health. As such, it serves as a valuable educational resource for the public, raising environmental awareness and encouraging active involvement in nature conservation.

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E-publication
Beáta Valkay ed.
Ivana Slepáková-Andrej Mock a kol.

The textbook EFFUSE – River Landscape, Volume 1: Scientific Education for Everybody, developed within the EFFUSE project, explores the importance of water for living organisms and the specific features of water in the Transcarpathian region. It addresses the issue of water pollution and presents bioindication as an effective method of environmental research. The publication explains how the ecological status of rivers and water quality can be assessed using aquatic plants, insects, fish, and amphibians. It also raises awareness about the microbial composition of water and offers guidance on protecting oneself from waterborne infections. Finally, it highlights the significance of environmental education and awareness in strengthening the relationship between humans and the natural environment.

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Erik Sedlák - Rastislav Varhač -  Patrik Danko - Helena Paulíková - Dušan Podhradský

The presented scripts were created in an effort to update and especially clarify the tasks that are solved in the basic practical exercises in biochemistry students of the 2nd and 3rd year of the bachelor's degree in chemistry, biology and their combinations with other disciplines. Most of the tasks come from the original scripts "Podhradský, Mihalovová: Praktické cvičenia z biochémie, Košice 1989".

Some of them have been modified to a greater or lesser extent and adapted to current conditions in the laboratory. New tasks were also added, such as those dedicated to nucleic acids. The scripts are thematically divided into six separate units, each of which consists of several tasks. The names of the units correspond to the nature of the biomacromolecules, which form their central theme. Theoretical introductions at the beginning of the unit are newly constructed and their main goal is to provide a brief overview of the basic biochemical methods used in the study of biomacromolecules.

These scripts are intentionally only available in electronic form. The reason is the effort to continuously update and modernize individual tasks according to the changing possibilities of our laboratory. We hope that the scripts will fulfill their role and that students will have sufficient theoretical knowledge and practical skills in the field of basic biochemical methods after completing these laboratory exercises.

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Nataša Tomášková

Selected tasks and problems from biochemistry – metabolism follow biochemistry lectures on metabolism and individual metabolic pathways for students of the second and third year of the bachelor’s degree in the fields of chemistry, biology and their combinations with other fields. Scripts provide an opportunity to better understand the lectured subject matter of metabolism through the solution of tasks and problems as serve as a basis for one-hour exercises. The scripts are divided thematically into eleven chapters, and each chapter contains 10 tasks and 7 problems. At the beginning of the chapters there is a short description and explanation of the given metabolic pathway. However, when solving the tasks, the student must focus mainly on the curriculum that was presented on the given topic in the lecture. Subsequently, at the end of chapter, answers to problems are also presented. These scripts are intentionally accessible only in electronic form. The reason is the effort to continuously update and modernize individual tasks.

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Vladimír Komanický

The aim of this textbook is to acquaint students in physics, chemistry and material science on both undergraduate and graduate level, with the techniques used to prepare micro-electromechanical devices, nanoobjects and nanostructures using the so called top down methodologies. The is no requirement for this course to pass any prior courses. The introduction part of the text defines the forces that affect nanoobjects and the interactions between them. Reader can understand in detail why properties of nanomaterials and nanostructures are so different when comprared to their macroscopic counterparts. Text gives also an overview of thin film preparation technologies as precursors for the preparation of nanostructures. The main emphasis in Volume I is on conventional lithographic technologies for the preparation and shaping of nanostructures, methods for characterization of thin films, nanoparticles and nanomaterials. Unconventional lithographic methods will also be discussed in the prepared upcoming Volume II. Student will also get acquainted with the applications of nanostructures in research focused on nanophysics, nanocatalysis and nanoelectronics. The textbook is used as a study material for the course ÚFV / MPN / 14 - Methods of preparation and characterization of nanostructures. Part of the course is also a laboratory exercise in which the student gets acquainted with the techiques used for the preparation and characterization of thin films and top-down technologies used for the preparation of nanostructures.

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Ján Kleban a kolektív

Predkladaný pracovný zošit na praktické cvičenia z cytológie je určený poslucháčom 1. ročníka bakalárskeho štúdia biológie a 1. ročníka bakalárskeho medziodborového štúdia v kombinácii s biológiou na Prírodovedeckej fakulte Univerzity Pavla Jozefa Šafárika v Košiciach. Slúži ako návod, ktorý má študentom uľahčiť prácu a umožniť rýchlejšiu orientáciu v zadanej úlohe. Úprava pracovného zošita do formy protokolov umožňuje študentom zakresliť vlastné pozorovanie a tým stimuluje študentov k presnejšiemu a trvalejšiemu zapamätaniu si precvičovanej úlohy a zároveň umožňuje spätnú kontrolu pedagógom. Počas cvičení sa študenti postupne oboznámia so základnými pojmami optiky, s aplikáciami využívajúcimi mikroskopickú techniku, ale aj so základnými rozdielmi medzi štruktúrou rastlinnej a živočíšnej bunky a ich organelami.

Matúš Harminc

Učebný text je určený poslucháčom medziodborového štúdia v kombinácii s matematikou, jednoodborového štúdia matematiky ako aj rozširujúceho štúdia matematiky. Je zameraný na základné poznatky o deliteľnosti celých čísel, kongruenciách a aritmetických funkciách.

Autor

E-book

Daniela Kladeková

This university text is intended for students of chemical and ecological sciences at the Faculty of Natural Sciences of the P. J. Šafárik University in Košice and is intended to serve as a tool for experimental exercises in colloid chemistry. Colloid chemistry is an important part of the theoretical basis of the chemical sciences and belongs to the newer interdisciplinary fields of natural sciences.

It combines knowledge from physical chemistry, physics and biology, while also drawing on a solid knowledge of mathematics and other scientific disciplines. Experiments are often essential in understanding the problems of colloid chemistry, modelling ideas about the phenomena and laws involved in the discipline. This is why active participation in experimental exercises is so important and essential to mastering the material in colloid chemistry.

In selecting the tasks for these scripts, it was also necessary to respect the considerable limitations imposed by the possibilities of the laboratory instrumentation and material equipment of our department. Despite this limitation, however, they can illustrate to students the basic theoretical physicochemical principles of colloid dispersion systems and, importantly, their understanding can contribute to the understanding of some of the more important peculiarities of colloidal phenomena.

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