Biochemická terminológia

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Ľubomír Antoni-Stanislav Krajči

An important part of theoretical computer science is the problem of Turing machines. This computational model has two basic properties: like any other computational program, the software of a Turing machine is composed of instructions, but in its case they are all of a single type. Every other (so far known) computer program can be transformed into a Turing machine program without loss of information. While the second feature reduces the question of what a calculator cannot do to the question of what a Turing machine cannot do, the first feature allows a much simpler investigation of such a question. Using this computational model, we can thus find concrete problems that no automaton can ever deal with (perhaps the most famous is the problem of the Turing machine stopping). Their existence demonstrates the fundamental limitations of (not only ideal) computational means, and thus encourages both criticality and humility in our thinking.

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Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

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Marcel Uhrin - David Jandzik - Andrej Čerňanský - Michal Rindoš - Blanka Lehotská - Stanislav Danko - Ján Kautman - Peter Mikulíček - Peter Urban - Daniel Jablonski

Bibliographies provide basic scientific information, illustrate quality and intensity of research in a particular topic, area, or time, and thus help build a cultural-historical perspective of society’s appreciation of knowledge and education. Here we provide a bibliography of herpetological research in the region of Slovakia between the years 1791 and 2017. We collected 2,183 references authored by 1,453 different authors and covering all species of amphibians (18) and reptiles (13) occurring in Slovakia and, in addition, amphibian and reptile taxa occurring in 94 other countries.

Most of the contributions were published in popular magazines and non-indexed journals, while only about 12% of all references represent scientific articles from journals indexed in relevant scientific databases. The extensiveness of study on amphibians and reptiles has varied among different periods within the selected time frame. However, an obvious intensification in the field of herpetology can be observed, especially during the second half of the 20th century. While there have only been few professionals specialized in herpetology, an important role in promoting the research and conservation of amphibians and reptiles in Slovakia has been played by non-governmental organizations and hobbyists. The most frequent type of herpetological data in the referenced literature comes from faunistic research, followed by conservation and general information on herpetofauna, with the majority of published articles in indexed journals coming from the fields of palaeontology, phylogeography, and population genetics.

The presented bibliography is the first step towards building a solid base for future systematic herpetological research in the country and Central Europe.

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Michal Jaščur -Michal Hnatič

In the textbook, the processes belonging to an area of  nonequilibrium physics, which make the basis for the study and analysis of compex phenomena  of statistical mechanics, are described. The Boltzmann equation for distribution function is derived and on this basis the hydrodynamic equations are constructed.  Stochastic processes are described separately and Fokker-Planck equation for density probability  is derived. Textbook is intended for the students of second year of master study at Faculty of Science of P. J. Šafarik University.   

Autors

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Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

Adriana Zeleňáková

Magnetic nanoparticles are extremely interesting magnetic objects that still hide much that is undiscovered, both because of their physical properties and because of their diverse applications. Iron nanoparticles, or iron oxides, are used in medical diagnostics for magnetic resonance imaging, in the treatment of hyperthermia, and an important application is the use of magnetic particles for targeted drug delivery.

The textbook "Magnetic Nanoparticles: Nanomagnetism, Preparation and Advanced Applications" is intended primarily for students of the Master's programme in Physics and students of related disciplines at universities and faculties with a physical, chemical, metallurgical and biophysical focus. The motivation for writing this textbook was to develop study material that would contribute to improving the quality of teaching in the profile subject Nanomaterials and Nanotechnology at the Institute of Physical, Faculty of Sciences, UPJŠ, in the Master's programme Condensed Matter Physics, as well as in the profile subject in the PhD programme Advanced Materials.

The university textbook is divided into eight chapters. The first and second chapters are devoted to basic information about magnetism, the origin of nanomagnetism in nanoparticles and surface phenomena. The third and fourth chapters are devoted to nanomagnetism in nanoparticle systems. The fifth chapter describes in detail individual protocols for investigating the phenomenon of superparamagnetism and the phenomenon of superspin glass using the SQUID device. The sixth chapter describes individual procedures for the preparation of magnetic nanoparticles and the seventh chapter describes individual experimental techniques for the study of magnetic nanoparticles. The final eighth chapter describes the applications of nanoparticles in biomedicine.

During the writing of this textbook, the chapters were prepared using the foreign-language specialist literature listed in the recommended reading list.

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Miroslava Martinková

This electronic material provides the basic principles of creating a systematic nomenclature of organic compounds, from the simplest hydrocarbons to the more complicated nomenclature of carbohydrates. For some groups of derivatives, alternative ways of generating system names are also mentioned, as well as the most common trivial names that are still in use in the literature and in practice, in some cases being the characteristic (dominant) ones. In the introductory section, the basic rules to be respected when writing names of organic compounds are discussed. This document is intended primarily for interdisciplinary undergraduate and graduate students as support material for the courses Organic Chemistry and Selected Chapters in Organic Chemistry and Biochemistry. In the final section of this document, solved examples are given so that the student can check how the rules for forming the names of organic compounds have been understood.

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Mária Vilková - Monika Garberová - Michal Goga

Nuclear Magnetic Resonance (NMR) is currently a widely used analytical tool that finds application in many fields of science and technology. The broadening of its practical use brings with it the necessity to create educational texts appropriate to the given scientific discipline.

This university textbook is intended for students of biology and serves as a supplement to the study materials for the advanced master's course "Biology of Lichens." At the same time, it represents a useful resource for master's and doctoral students involved in research, helping them interpret NMR spectra and present basic theoretical concepts.

The textbook briefly describes the important aspects of each NMR spectroscopic technique without delving excessively into the physical principles of individual methods or complex mathematical analyses. In this edition, the structures of lichen metabolites have been included, which students will isolate, purify, and identify using various analytical methods during practical exercises. An entire chapter is dedicated to a detailed description of solving the NMR spectra of isolated metabolites, with each step in elucidating the structures of both known and unknown metabolites explained in detail. The solved tasks are followed by numerous unsolved examples, including high-resolution 1D and 2D NMR spectra of metabolites, intended to further develop the acquired knowledge and skills of students and doctoral candidates in structure elucidation using NMR spectroscopy.

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Vlasta Demečková - Petra Hradická - Petra Adamková

The learning material for the course Practice in Immunology is based on several years of experience with teaching this subject, but mainly to provide students from the Biology Department at the Faculty of Natural Sciences, UPJŠ in Košice with sufficient theoretical background for practical exercises. It also serves as a scientific diary for detailed recording of all experimental data necessary for preparing laboratory protocols from individual exercises.

In studying biology, it is essential that students thoroughly understand not only the basics of each discipline but also acquire practical skills, including designing scientific experiments, selecting appropriate analytical/investigative techniques up to interpreting and presenting experimental data. The goal of this new publication is therefore to provide master's students with a practical study guide that supports and expands their knowledge about basic immunology principles.

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Janka Vrláková - Adela Kravčáková - Stanislav Vokál

The presented "Collection of Problems in Atomic and Nuclear Physics" is intended as a basic study material for lectures in General Physics IV in the second year of the bachelor's single-subject physics program and interdisciplinary studies combined with physics at the Faculty of Science of P. J. Šafárik University in Košice.

Its aim is to support independent student work and to deepen the acquired knowledge from the given physics course by solving selected problems. It is divided into three main parts: Atomic Physics, Nuclear Physics, and Experimental Methods of Nuclear Physics.

Each thematic chapter contains an overview of basic concepts, relations, and formulas necessary for better understanding of sample problems and for solving the attached set of unsolved problems.

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Vladimír Zeleňák (ed.)

Proceedings of Abstracts of the Student Scientific Conference of the Faculty of Science, Pavol Jozef Šafárik University in Košice

A characteristic feature of education at high-quality universities — among which the Faculty of Science at Pavol Jozef Šafárik University (UPJŠ) in Košice proudly belongs — is the close connection between education and scientific research. Students gain knowledge in their field of study not only through theoretical coursework in individual disciplines, but also through active involvement in solving specific scientific tasks as part of research teams. This can occur during the development of final theses or through participation in the Student Research Assistant Program (ŠPVS), which was revitalized at the faculty in 2015.

The Student Scientific Conference (ŠVK) is one of the faculty’s traditional events, organized during the Faculty’s Science Days as part of Sciencefest. By its very nature, it fits seamlessly into the aforementioned framework of combining education with research, and it has long enjoyed great popularity and student interest. In 2016, the conference featured presentations by 125 students of the Faculty of Science at UPJŠ in Košice, across 16 thematic sections. This collection of abstracts provides an overview of the focus and goals of the student projects. We believe it will serve as inspiration for other potential participants of future conferences and will also be of interest to the broader public, offering additional insight into the faculty's activities.

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Jana Shepa (ed.)

The book of abstracts from the second year of the international conference Spring electrochemical meeting is composed of contributions from the participants of this student conference.

The conference consisted of one invited lecture and ten competing student lectures. The message of this meeting is to create a dialogue between students of electrochemistry and the mutual exchange of knowledge. All contributions are professionally processed and inspiring.

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Karel Saksl

The aim of these study texts is to provide students in the second and third levels of higher education with specific guidance on processing 2D diffraction data, performing phase analysis from X-ray diffraction data, and refining microstructural parameters of identified phases using the Rietveld refinement method.

This guide is designed in the form of real-world tasks from materials research and leads the reader step by step through the processes of processing, evaluating, and interpreting the measured data. For this purpose, freely accessible programs such as Fit2D, QualX, POV-Ray, and GSAS II will be used, as well as a freely downloadable commercial program (Diamond) that allows for task execution in demonstration mode. Phase analysis will be conducted exclusively using the freely distributable crystallographic database Crystallography Open Database (COD).

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Martin Orendáč

The textbook is designed to prepare students who will engage in the experimental study of the properties of condensed matter. It demonstrates that a contemporary experimental physicist must not only possess sufficiently detailed knowledge of the physical processes occurring within the object under study but also understand the methods for creating the experimental conditions in which the experiment is conducted. Active knowledge of the functioning of the entire experimental setup can be of fundamental importance in the implementation or potential modification of the measurement methodology used.

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Mária Ganajová

The current teaching of chemistry has its specific problems. On one hand, due to the shift of the focus of chemistry curriculum towards theoretical content, the difficulty of chemistry material has increased, and in connection with this, students' interest in chemistry has decreased.

The lack of student interest in chemistry is mostly supported by the opinion that it is precisely chemistry that significantly contributes to the deterioration of environmental quality. On the other hand, we live in an era where we encounter chemical products practically everywhere. It is necessary to learn the basics of chemistry as well as possible, which makes the question of increasing interest in chemistry education and improving its effectiveness very relevant. State educational programs have been introduced into Slovak schools as a foundation for the creation of school educational programs. These emphasize not only acquiring a certain amount of knowledge but also the development and enhancement of key and specific competencies of students, preparing them for lifelong learning and their application in life.

Therefore, increasing attention is being paid to one of the fundamental didactic tools for raising student activity in teaching, and thus improving the effectiveness of chemistry education – learning tasks. From both theory and practice of chemistry teaching, we know that learning tasks, questions, examples, exercises, etc., are among the important components of every teaching lesson. Learning tasks are applied in all phases of teaching – in the motivational phase, the phase of acquiring knowledge, the phase of consolidating knowledge, and the phase of checking the acquired knowledge. It is therefore clear that every teacher will sooner or later find themselves in a situation where they will have to select learning tasks from textbooks, workbooks, collections of problems and examples, or create them themselves.

This scientific monograph is intended for educational specialists and chemistry teachers, aiming to familiarize them with examples of various types and forms of learning tasks and the basics of their creation in chemistry. It can also be helpful for them in preparing certification works focused on test creation and their statistical evaluation.

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Andrea Morovská Turoňová

The discovery of radioactivity at the turn of the 19th and 20th centuries stimulated the rapid development of nuclear sciences. At the interface between nuclear physics and chemistry, disciplines such as radiochemistry, radiation chemistry and nuclear chemistry were formed.

The aim of the Nuclear Chemistry course which is taught at the PF UPJŠ is to provide basic knowledge, with an emphasis on the general value of the subject. It is important to make available the basics of various methods, techniques and their specifics in the application of nuclear phenomena in chemistry and related fields. Emphasis is also placed on the use of correct terminology, knowledge of the context of relationships and basic principles, supplemented by illustrative concrete cases.

The choice of material is rather difficult, but we count on additional monographs and textbooks to fill in the gaps of these teaching texts.

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