School of XFEL and Synchrotron Radiation Users – SFEL 2024

E-book

Jozef Kováčik

These "Exercise Manuals" present a concise overview of commonly used methodologies as well as progressive techniques, such as the use of liquid chromatography and fluorescence microscopy. Individual tasks were selected based on the research focus of the Department of Botany at the Faculty of Science, Pavol Jozef Šafárik University in Košice, particularly in the context of "stress physiology."

Some tasks can also be utilized within the subject "Plant Ecology." Chamomile (Matricaria chamomilla) is typically used as a model plant for individual tasks due to its long-standing history of research at the Department of Botany and its ease of cultivation under laboratory conditions. The chapters also briefly discuss the significance of monitored parameters, principles of their determination, and metabolism (formation or degradation), aiming to indicate their mutual context.

This approach highlights that determining an individual parameter cannot provide a general explanation for the overall causes and impacts of observed changes; however, it can serve as a basis for testing hypotheses at the level of other parameters.

For deeper study of specific issues, there is an abundance of high-quality international monographs and review articles available.

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E-book

Peter Fedoročko (eds.)

From June 14 to June 17, 2022, the 8th annual Spring School for Doctoral Students at Pavol Jozef Šafárik University in Košice will take place in Liptovský Ján. The scientific program of the spring school will comprise 3 plenary lectures by leading scientific experts and 1 workshop. Doctoral students will present their research papers in two sections: 22 doctoral students of Faculty of Public Administration, Faculty of Law and Faculty of Arts, and 26 doctoral students of Faculty of Medicine and Faculty of Science. The scientific programme of the spring school will also include a panel discussion with the management of Pavol Jozef Šafárik University in Košice.

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E-book

Milan Žukovič

The textbook Computational Physics I covers the topics taught in the course of the same name at the bachelor's level of the Physics study program, as well as in the course Application of Numerical Methods at the bachelor's level of the Applied Informatics study program.

The text builds upon the basic course in numerical methods, focusing on explaining the fundamental principles of computer-based solutions to some typical physics problems. It includes both the area of deterministic methods for solving problems modeled by ordinary and partial differential equations, as well as the area of stochastic Monte Carlo simulations. The course Computational Physics I lays the foundation for further study of more advanced computational methods taught at the master's level in the subject Computational Physics II. Nowadays, the use of computers as a tool for solving real physics problems, and for students as a tool for preparing their final bachelor's or master's theses, is almost indispensable.

This has led to the creation of numerous user-oriented software packages in various environments for solving a wide range of problems. However, without a thorough understanding of how individual computational techniques work, these programs become black boxes with many pitfalls and risks in their use. Therefore, this text emphasizes understanding both the strengths and weaknesses of individual methods and the assumptions for their successful application.

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 Ľubomír Panigaj - Peter Ľuptáčik 

(Náčrt systému a fylogenézy)

Učebný text je primárne určený pre študentov jednoodborového štúdia biológie a všeobecnej ekológie, ako aj odborom učiteľského štúdia v rôznych kombináciách s biológiou. Venuje sa v nich opisu jednotlivých skupín živočíchov, ich morfológiu a anatómiu ilustruje na obrazových materiáloch. K jednotlivým morfologickým a anatomickým štruktúram sa v texte nevyjadrujeme podrobnejšie, nakoľko text nadväzuje na predmet Porovnávacia morfológia živočíchov, kde na úrovni organológie boli tieto najvýznamnejšie štruktúry v rámci prednášok a cvičení detailne vysvetlené a opísané. Rozsah učebného textu nie je veľký, podávame v ňom základné minimum poznatkov, čo je podmienené jednak rozsahom predmetu, ktorý je len jednosemestrový, jednak tým, že ďalšie, špecializované predmety rozširujú spektrum poznatkov napr. na úrovni entomológie, hydrobiológie alebo pôdnej biológie. V zavere niektorých kapitol formulujeme niekoľko cvičných otázok, ktoré si študenti môžu na základe predchádzajúceho textu zodpovedať, s podobnými otázkami sa totiž môžu stretnúť na skúške alebo na štátniciach.

Autori

E-book

Renáta Oriňaková(ed.)

Trends in chemistry, research and education at Faculty of Sciences of P.J. Šafárik University Košice

November 4, 2016, Faculty of Natural Sciences, Pavol Jozef Šafárik University, Košice, Slovakia

Organized by:
Faculty of Natural Sciences
Pavol Jozef Šafárik University in Košice
Slovak Chemical Society

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E-book

Adriana Zeleňáková - Jozef Bednarčík

Peer-reviewed Proceedings of the Scientific Conference NANOVIR

The main objective of the scientific conference NANOVIR was the presentation of scientific results obtained during the implementation of the NANOVIR project – Nanoparticles for solving diagnostic and therapeutic problems with COVID-19, co-financed by the European Regional Development Fund within the Operational Programme Integrated Infrastructure 2014 – 2020, ITMS: 313011AUW7.

The project was carried out from January 1, 2021, to June 30, 2023, and was supported with a sum of EUR 1,916,004.79. Three co-investigating organizations participated in the project: Pavol Jozef Šafárik University in Košice as the main investigator, the University of Veterinary Medicine and Pharmacy in Košice as partner no. 1, and the Institute of Experimental Physics of the Slovak Academy of Sciences as partner no. 2.

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Erik Bruoth - Juraj Šebej - Ľubomír Antoni

In these university-level textbooks, we present the fundamental concepts of networks and graph theory. We explore breadth-first and depth-first graph searching. We present static and dynamic network models. We describe the issue of detecting overlapping and non-overlapping communities in directed and undirected networks. Various approaches to anomaly detection in networks also form an important part of this textbook. The final chapter is dedicated to spectral clustering, which plays a significant role in data mining in network graphs for various application domains.

These textbooks are suitable for first and second-year university students in computer science programs. The study materials are also suitable for students in non-computer science fields, with the aim of improving their knowledge and practical experience in computer science-related areas, and provide an opportunity for students to find employment in IT companies to solve practical tasks.

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E-book

Michal Jaščur

This is a supporting text for the undergraduate students interested in quan- tum theory of magnetism. The text represents an introduction to various theoretical approaches used in this eld. It is an open material, in the sense that it will be supported by appropriate problems to be solved by student at seminars and also as a homework.

The text consists of four chapters that form closed themes of the in- troductory quantum theory of magnetism. In the rst part we explain the quantum origin of the magnetism illustrating the appearance of the ex- change interaction for the case of hydrogen molecule. The second chapter is devoted to the application of the Bogolyubov inequality to the Heisenberg model and it represents the part which is usually missing in the textbooks of magnetism. The third chapter deals with the standard spin wave-theory including the Bloch and Holstein-Primakoff a approach. Finally, we discuss the application of the Jordan-Wigner transformation to one-dimensional spin-1/2 XY model.

The primary ambition of this supportive text is to explain diverse math- ematical methods and their applications in the quantum theory of mag- netism. The text is written in the form which should be sufficient to de- velop the skills of the students up to the very high level. In fact, it is expected that students following this course will able to make their own original applications of the methods presented in this book.

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E-book

Zuzana Jurašeková

Úvod k praktikám k experimentálnym metódam biofyziky

The university textbook titled Laboratory Techniques and Calculations is designed for the first-year students of the bachelor's degree in Biophysics at the Institute of Physics, Faculty of Sciences, P. J. Šafárik University in Košice. The objective is to equip students with fundamental knowledge and practical skills for the work in a chemical laboratory. It is essential for addressing different biophysical issues and experiments that students will have to solve later. The textbook comprises three principal sections: a theoretical part focused on the calculations, a section dedicated to laboratory work, and the last part offers a brief introduction to spectroscopy. The theoretical part summarizes the basic definitions and equations related to the characterization and preparation of solutions and mixtures. The second, most comprehensive part provides guidance and suggestions for safe and efficient practices in a chemical laboratory. The primary focus is on the manipulation of chemical substances and the use of specific small laboratory instruments and equipment. The fundamental laboratory procedure guides for the selected laboratory works are also provided. As part of a short introduction to spectroscopy, students can become familiar with fundamental spectroscopic concepts and principles. UV-VIS absorption spectrophotometry receives special attention, along with a brief introduction to fluorescence. The textbook is supplemented by various practical and theoretical tasks, as well as numerous web links to further explanatory texts and videos.

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Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

E-book

Jana Shepa  (ed.)

The book of abstracts from 8th International Conference on Novel Materials: Fundamentals and Applications, NFA 2023 is composed of contributions from the participants of this international conference. The conference consisted of 6 invited lecture and 38 abstracts of participants. The conference is focused on novel materials and its application in various research areas. All contributions are professionally processed and inspiring.

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E-book

Jana Shepa (ed.)

The book of abstracts from the first year of the international conference Autumn electrochemical meeting is composed of contributions from the participants of this student conference.

The conference consisted of one invited lecture and six student lectures. The message of this meeting is to create a dialogue between students of electrochemistry and the mutual exchange of knowledge. All contributions are professionally processed and inspiring.

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E-book

Božena Mihalíková - Ján Ohriska

This text is intended for first-year students in 76-12-8 ‘General Education Teaching’ in combinations with mathematics. It is based on the authors' lectures and their more than ten years of experience in teaching this subject at the Faculty of Education of the University of Applied Sciences. When writing it, the authors tried to take into account the specificity of mathematics teaching studies.

The present teaching text was not written due to the lack of textbooks on mathematical analysis. The reason for writing it was the authors' findings that the students do not have sufficient experience in working with specialized literature from secondary school, the difficulties for many of them (especially in the first semesters) are caused by even a slightly different interpretation, not rarely also by a change in labeling, which makes them miss the essence of the studied problem. The authors of the text did not set out to be original. Their aim was to make such a selection of topics as is necessary for a future teacher of mathematics and to choose such a method of interpretation which, in their opinion, is suitable for first-year students.

A good mastery of the curriculum (expansion of the mathematical apparatus and the related possibilities of applying other methods of proof as well as the acquisition of the necessary numerical skills) presupposes the use of other literary sources (textbooks, collections of problems) according to the teacher's recommendation.

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E-book

Gregor Bánó

Photonics is an application-oriented discipline at the interface of optics, opto-electronics and quantum optics. It includes classical optics extended by the description of physical phenomena and optical devices that rely on quantum (photon) nature of light.
The main objective of the Photonics course is to provide a comprehensive overview of essential optical and photonic phenomena routinely applied in experimental scientific research while working with various light sources (e.g. in the field of biophotonics). The first chapters are devoted to the description of light at different levels. The logical order of subsections in this part corresponds to the structure of the textbook: B. E. A. Saleh, M. C. Teich, Fundamentals of Photonics. The following chapters contain a description of laser operation and an overview of selected optical instruments and their applications.
The body text is complemented by practical notes on the use of theoretical knowledge during daily work in the laboratory. The course of Photonics requires a basic knowledge of mathematics, electromagnetism and optics, and thus it is recommended to students who previously passed through the courses of the Bachelor's program in Physics.

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E-book

Ivan Potočňák

The script is a study literature for the subject Chemical Calculations, which is a mandatory course in the bachelor's degree programs in Chemistry and Chemistry – Interdisciplinary Studies, first year. The script contains 10 chapters with a total of 207 pages, guiding students through solved and unsolved examples to help them understand the subject matter.

Author

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Igor Hudec - Ľubomír Kováč 

The study course provides the basic knowledge on the fundamental parameters, relationships and processes in ecological sciences. Brief content: ecological factors and relations to environment (air, water, soil); influence of ecological factors upon organisms (morphological adaptations, behavioural responses); populations and communities (external and internal parameters of populations, population dynamics); ecosystems (impact assessment) and biomes (basic features and human impact); cycles (hydrologic, gaseous, sedimentation) of basic elements on Earth.  

Authors