Úvod do experimentálnej techniky v biológii

E-book

Valéria Skřivánková - Martina Hančová

The publication is focused on discrete random processes, primarily on Markov chains, which have wide application in the field of economics and finance.

The textbook is divided into five chapters, the first of which serves as an introduction to random processes and provides definition, properties and classification of random processes in general. The second chapter discusses Markov chains with discrete time, including valuation of transitions between states and their optimal management. The third chapter focuses on special Markov chains with continuous time and emphasizes construction and solution to the system of Kolmogorov differential equations, which describe the dynamics of the process development. The last two chapters illustrate applications of Markov chains using examples of queuing system modeling and renewal theory.

Besides the explanation of basic terms, definitions and theorems with proofs, this textbook also provides number of solved examples to illustrate the discussed theory. Problem assignments are placed at the end of each chapter, so that readers can test their understanding of the content as they progress through the book. Solutions to all the problems and the list of references are provided at the end of the publication.

This textbook is primarily intented for students majoring in Economics and Financial Mathematics at the Faculty of Science of Pavol Jozef Šafárik University in Košice, and it covers content of the course “Random Proceses 1“ thought there. It might however serve also students from other schools in similar progams or professionals interested in this topic.

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E-book

Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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E-book

Milan Žukovič

This textbook is intended for master's degree students and is a follow-up to the Computational Physics I course studied at the bachelor's level. The content of the textbook Computational Physics II focuses on stochastic methods of solving physical problems, mainly on Monte Carlo (MC) simulation of many-particle systems.

The focus on this computationally intensive approach is motivated by the gradual increase in the computing capacities of ordinary computers as well as the introduction of high-performance computing clusters. This has led to significant progress in the development of new simulation techniques, thanks to which MC simulations have found application in various areas of research and application practice. Considering the main research focus of the department, this text is particularly devoted to the presentation of basic and more advanced MC simulation techniques applied to a simple Ising spin model in order to investigate its magnetic, thermodynamic and critical properties.

The next part is devoted to MC simulations of random processes. It focuses on the simplest but also the most basic random walk process and demonstrates its applications in financial analysis and the solution of a quantum system described by the time-dependent Schrödinger equation. The last part is dedicated to the basics of molecular dynamics, applied to simulating the classical movement of atoms in a given force field. By mastering the problems addressed in this course, students will obtain a potential tool for working out of their diploma theses, or a methodology useful for their further scientific and research practice in the field of investigating of complex systems.

The lectured topic is subsequently exercised in the form of preparing projects implemented in the freely distributable software Octave, which is easy on the user's programming skills and which students have the opportunity to familiarize themselves with in the previous study.

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Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

E-book

Stela Csachová - Ján Kaňuk - Alena Gessert - Ladislav Novotný - Štefan Gábor - Jozef Šupinský

This book addressed the inquiry-based learning and teaching with the support of geospatial technologies. Today, geospatial technologies are influencing geography teaching learning, particularly in secondary education. Theoretical framework gives the reader the insight to inquiry-based learning, with special focus on inquiry in geography. The one-by-one step of inquiry is analysed in detail. The major part of the book presents the eleven models of geography lessons, representing the subject content of physical, human and regional geographies, various levels of inquiry and use of different geospatial technologies. The readers are acquainted with the use of geographic information system (particularly Google Earth and ArcGIS online), web portals, webGIS, open data, mobile applications and new forms of 3D cartographic visualisation (virtual reality, 3D print, dynamic 3D map) in teaching geography. The lesson models were tested with the students to be geography teachers in school year 2021/2022. This books serves as resource mainly for undergraduate teacher students and in-service geography teachers.

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E-book

Vlasta Demečková - Petra Hradická - Petra Adamková

The learning material for the course Practice in Immunology is based on several years of experience with teaching this subject, but mainly to provide students from the Biology Department at the Faculty of Natural Sciences, UPJŠ in Košice with sufficient theoretical background for practical exercises. It also serves as a scientific diary for detailed recording of all experimental data necessary for preparing laboratory protocols from individual exercises.

In studying biology, it is essential that students thoroughly understand not only the basics of each discipline but also acquire practical skills, including designing scientific experiments, selecting appropriate analytical/investigative techniques up to interpreting and presenting experimental data. The goal of this new publication is therefore to provide master's students with a practical study guide that supports and expands their knowledge about basic immunology principles.

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E-book

Vladimír Zeleňák (ed.)

The proceedings contain contributions from participants of the Student Scientific Conference of the Faculty of Science at UPJŠ in Košice, which took place on April 24, 2014.

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E-book

Erik Bruoth - Juraj Šebej - Ľubomír Antoni

In these university-level textbooks, we present the fundamental concepts of networks and graph theory. We explore breadth-first and depth-first graph searching. We present static and dynamic network models. We describe the issue of detecting overlapping and non-overlapping communities in directed and undirected networks. Various approaches to anomaly detection in networks also form an important part of this textbook. The final chapter is dedicated to spectral clustering, which plays a significant role in data mining in network graphs for various application domains.

These textbooks are suitable for first and second-year university students in computer science programs. The study materials are also suitable for students in non-computer science fields, with the aim of improving their knowledge and practical experience in computer science-related areas, and provide an opportunity for students to find employment in IT companies to solve practical tasks.

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E-book

Miroslav Almáši(ed.)

The proceedings of the conference 60 YEARS OF SCIENCE AND EDUCATION IN THE FIELD OF INORGANIC CHEMISTRY IN EASTERN SLOVAKIA comprise a collection of scholarly and scientific contributions presented on the occasion of the 60th anniversary of the establishment of the Department of Inorganic Chemistry at the Institute of Chemistry, Faculty of Science, Pavol Jozef Šafárik University in Košice. The conference focused on reviewing the scientific, research, and educational activities in the field of inorganic chemistry in eastern Slovakia and highlighting significant achievements accomplished over the sixty-year history of the department. The abstracts included in the proceedings cover a broad range of topics that reflect current trends and directions in inorganic chemistry. The proceedings are thematically divided into four main areas, encompassing contributions dedicated to inorganic, coordination, bioinorganic, and materials chemistry. This collection offers a valuable overview of the current state of research in inorganic chemistry, as well as its teaching and historical development in eastern Slovakia..

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E-book

Jozef Strečka - Hana Čenčariková - Andrej Gendiar (eds.)

The proceeding involves programme and abstracts of Workshop on Quantum Magnetism: Theoretical Challenges and Future Perspectives, which was held on June 7th – June 8th, 2019, in Košice, Slovakia.

The workshop is organized by Faculty of Science of Pavol Jozef Šafárik University in Košice and Institute of Experimental Physics of Slovak Academy of Sciences in Košice under the financial support of Slovak Research and Development Agency.

The main conference topics are devoted to state-of-the-art problems of Quantum Theory of Magnetism inncluding molecular magnetism, highly frustrated magnetism, magnetic phase transitions, quantum spin liquids, strongly correlated systems, exotic quantum states, flat-band systems and quantum entanglement.

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Norbert Kopčo - Frederick Gallun - Beáta Tomoriová - Ľuboš Hládek(eds.)

Cognitive neuroscience is a fast developing scientific field which aims at uncovering the neural basis of human perception and cognition. To achieve this goal, cognitive neuroscience uses a variety of tools and approaches ranging from non-invasive brain imaging to psychophysics and neural modeling. Mastering such tools requires skills and knowledge from multiple scientific domains, including neurophysiology, cognitive psychology, and several computational fields.

Access on request via email: kogneuro (@) gmail.com

http://pcl.upjs.sk/workshopcd 

https://sites.google.com/site/kogneuro/

E-book

Vladimír Sedlák

The university textbooks entitled Global Navigation Satellite Systems: GPS, GLONAS, Galileo, Compass present four navigation systems of the GNSS (Global Navigation Satellite Systems): American NAVSTAR GPS, Russian GLONASS, European Galileo and Chinese Compass. The Satellite-Based Augmentation Systems (SBAS) are also briefly explained. They provide regional service in augmenting the reach and support of signals from satellites of the GNSS (GPS, GLONASS, Galileo, Compass). Each satellite navigation system in the frame of GNSS is elucidated in terms of its principles of operation, structure, specificities, applications, and future perspectives.

The university textbook aims to improve the reader’s understanding of the principles and activities of the presented GNSS. The book emphasizes the possibilities of GNSS applications in geodesy and geography. The university textbook constitutes the basic study literature for the class Global Navigation Satellite Systems within the study program Geography and Geoinformatics at the Faculty of Science of the Pavol Jozef Šafárik University in Košice. For a deeper study of the GNSS issue, it is necessary to extend the study materials to include other educational scientific literature dealing with navigation satellite systems and their applications.

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E-book

Mária Vilková - Zuzana Kudličková - Aneta Salayová - Tomáš Ján Liška

The Nuclear Magnetic Resonance Practicum – Part 1: Quantitative NMR is designed for students taking the NMR Practicals course, which focuses on the practical aspects of quantitative nuclear magnetic resonance (qNMR). This publication builds on previous NMR courses and assumes basic theoretical knowledge of the method, emphasizing experimental procedures, data processing, and result interpretation. qNMR is a precise analytical technique with broad applications in analytical chemistry, pharmaceutical research, biomedicine, and quality control. The script provides a detailed guide to conducting experiments, as well as procedures for analyzing and evaluating acquired data. This publication offers students methodological guidance and support in mastering qNMR analysis and serves as a valuable resource not only during their studies but also for further research in NMR spectroscopy.

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E-book

Peter Fedoročko (ed.)

Proceedings of the 7th Annual Doctoral Spring School 2020

From November 10 to November 11, 2020, the 7th annual Spring School for Doctoral Students at Pavol Jozef Šafárik University in Košice will take place in Košice in a modified mode in the on-line space. The scientific program of the spring school will comprise 2 plenary lectures by leading scientific experts of Pavol Jozef Šafárik University in Košice. Doctoral students will present their research papers in two sections: 24 doctoral students of Faculty of Public Administration, Faculty of Law and Faculty of Arts, and 22 doctoral students of Faculty of Medicine and Faculty of Science.

The scientific programme of the spring school will also include a panel discussion with the management of Pavol Jozef Šafárik University in Košice.

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E-book

Marián Kireš - Renáta Orosová a kol.

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E-book

Miroslav Almáši (ed.)

The book of abstracts from the conference "Porous Materials for Environmental Applications 2024" is a collection of contributions of the conference participants, which contain original results of their scientific and research activities. The conference was aimed to share new findings dealing with the preparation, characterization and application of porous materials in environmental fields.

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E-book

Valéria Skřivánková - Martina Hančová

The publication is focused on discrete random processes, primarily on Markov chains, which have wide application in the field of economics and finance.

The textbook is divided into five chapters, the first of which serves as an introduction to random processes and provides definition, properties and classification of random processes in general. The second chapter discusses Markov chains with discrete time, including valuation of transitions between states and their optimal management. The third chapter focuses on special Markov chains with continuous time and emphasizes construction and solution to the system of Kolmogorov differential equations, which describe the dynamics of the process development. The last two chapters illustrate applications of Markov chains using examples of queuing system modeling and renewal theory.

Besides the explanation of basic terms, definitions and theorems with proofs, this textbook also provides number of solved examples to illustrate the discussed theory. Problem assignments are placed at the end of each chapter, so that readers can test their understanding of the content as they progress through the book. Solutions to all the problems and the list of references are provided at the end of the publication.

This textbook is primarily intented for students majoring in Economics and Financial Mathematics at the Faculty of Science of Pavol Jozef Šafárik University in Košice, and it covers content of the course “Random Proceses 1“ thought there. It might however serve also students from other schools in similar progams or professionals interested in this topic.

Download the e-book for free (pdf)

E-book

Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

Download the e-book for free  (pdf)

E-book

Milan Žukovič

This textbook is intended for master's degree students and is a follow-up to the Computational Physics I course studied at the bachelor's level. The content of the textbook Computational Physics II focuses on stochastic methods of solving physical problems, mainly on Monte Carlo (MC) simulation of many-particle systems.

The focus on this computationally intensive approach is motivated by the gradual increase in the computing capacities of ordinary computers as well as the introduction of high-performance computing clusters. This has led to significant progress in the development of new simulation techniques, thanks to which MC simulations have found application in various areas of research and application practice. Considering the main research focus of the department, this text is particularly devoted to the presentation of basic and more advanced MC simulation techniques applied to a simple Ising spin model in order to investigate its magnetic, thermodynamic and critical properties.

The next part is devoted to MC simulations of random processes. It focuses on the simplest but also the most basic random walk process and demonstrates its applications in financial analysis and the solution of a quantum system described by the time-dependent Schrödinger equation. The last part is dedicated to the basics of molecular dynamics, applied to simulating the classical movement of atoms in a given force field. By mastering the problems addressed in this course, students will obtain a potential tool for working out of their diploma theses, or a methodology useful for their further scientific and research practice in the field of investigating of complex systems.

The lectured topic is subsequently exercised in the form of preparing projects implemented in the freely distributable software Octave, which is easy on the user's programming skills and which students have the opportunity to familiarize themselves with in the previous study.

Download e-book for free (pdf)

Marcel Uhrin - Petr Benda -  Peter Kaňuch

Bats represent a unique group of mammals, characterised by different life strategies. They are the only mammals capable of active flight, which, combined with their almost exclusively nocturnal activity, has led to the evolution of specific adaptations. One of the most striking is echolocation, which enables them to orientate themselves perfectly in their surroundings in the dark. Bats are mainly native to the tropics, but have also colonised areas outside the tropics, which, has led to a complex phenological cycle with active phases and interruptions during hibernation, especially in temperate zones. In this diverse and species-rich group (almost 1,500 known species), there is a wide range of social organisation as well as feeding and roosting strategies. The textbook "Fundamentals of Chiropterology" brings the current state of knowledge about these extraordinary animals in eleven chapters and two appendices for the first time in the Slovak language.

E-book

Stela Csachová - Ján Kaňuk - Alena Gessert - Ladislav Novotný - Štefan Gábor - Jozef Šupinský

This book addressed the inquiry-based learning and teaching with the support of geospatial technologies. Today, geospatial technologies are influencing geography teaching learning, particularly in secondary education. Theoretical framework gives the reader the insight to inquiry-based learning, with special focus on inquiry in geography. The one-by-one step of inquiry is analysed in detail. The major part of the book presents the eleven models of geography lessons, representing the subject content of physical, human and regional geographies, various levels of inquiry and use of different geospatial technologies. The readers are acquainted with the use of geographic information system (particularly Google Earth and ArcGIS online), web portals, webGIS, open data, mobile applications and new forms of 3D cartographic visualisation (virtual reality, 3D print, dynamic 3D map) in teaching geography. The lesson models were tested with the students to be geography teachers in school year 2021/2022. This books serves as resource mainly for undergraduate teacher students and in-service geography teachers.

Download e-book for free (pdf)