Cell Biophysics II

E-book

Jana Shepa  (ed.)

The book of abstracts from 8th International Conference on Novel Materials: Fundamentals and Applications, NFA 2023 is composed of contributions from the participants of this international conference. The conference consisted of 6 invited lecture and 38 abstracts of participants. The conference is focused on novel materials and its application in various research areas. All contributions are professionally processed and inspiring.

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E-book

Renáta Oriňáková (ed.)

Book of abstract

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E-book

Adriana Zeleňáková

One of the fundamental characteristics of the magnetic state of ferromagnetic materials is the existence of a domain structure. The university textbook "MAGNETIC DOMAINS: SPECIAL PHYSICAL PRACTICE 1" is intended primarily for students of the Master's programme in Physics of Condensed Matter FKLm and for the PhD programme in Progressive Materials PMd within the profile subject Special Practice 1 at the Institute of Physical Sciences of the Faculty of Sciences of the Pavol Jozef Šafárik University in Košice.  The textbook is divided into seven chapters. The first chapter is devoted to the basics of domain theory, including the history of domain observation and the specification of different types of energies in ferromagnetic body. The second chapter presents the relationship between domain structure and magnetisation processes in ferromagnetic materials The third chapter describes the different types of domain-wall interactions with the defect. The fourth chapter illustrates examples of domain structure in selected ferromagnetic body such as grain oriented and non-grain oriented electrical steels, amorphous and nanocrystalline ribbons. The fifth chapter summarises an overview of the different experimental methods used to visualise the domain structure and their advantages or disadvantages with respect to the structure of ferromagnetic materials. The last two chapters, the sixth and the seventh, are devoted to specific experimental tasks for observing the domain structure of a selected polycrystalline sample using the optical microscope Bitter powder method and the MFM (magnetic force microscopy) method. During the preparation of this undergraduate text, its individual parts were developed using the foreign language literature listed in the recommended references.

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E-book

Norbert Kopčo

Neuroscience is an interdisciplinary field of science at the interface of biological, psychological and computer sciences, which aims to describe the functioning of the brain and mind. Computational and cognitive neuroscience are subfields of neuroscience focused on the study of information processing in the human and animal nervous systems, and on the theoretical description of the brain and mind. This university textbook contains several assignments that provide an overview of the methods used in computational and cognitive neuroscience, with an emphasis on mathematical modeling and on the behavioral study of cognitive processes. The textbook builds on the author's previous works.

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E-book

Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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Danica Studenovská - Tomáš Madaras 

Táto publikácia je určená pre študentov nematematických odborov na Prírodovedeckej fakulte UPJŠ v Košiciach. Jej obsahom je látka preberaná v prvom semestri v rámci predmetu Matematika I..

Publikácia nadväzuje na učivo stredných škôl a nevyžaduje žiadne predbežné špeciálne znalosti. Môže slúžiť ako základ na ďalšie samostatné štúdium a môže byť užitočná aj pre iných záujemcov o matematiku a jej aplikácie.

Vyriešené príklady v jednotlivých kapitolách majú pomôcť čitateľovi pri zvládnutí štúdia. Tomu napomáhajú aj ilustratívne obrázky.

Autori

E-book

Katarína Kimáková

The textbook is intended for university students who are preparing for the profession of biology teacher. The structure of the book is similar to an encyclopedia, with one page devoted to each content item, but the topics of the chapters and subchapters follow each other. The explanatory text on the page illustrates the diagram and there are notes and links to other sources of information. For better orientation, the content of the textbook is divided into 8 sections, which cover several chapters. It follows the general didactics, which it connects with the teaching of biological content. The book provides a basic orientation in the approaches to learning this subject, and also explains the relationship between biology as a science and the didactics of biology. It deals with teaching standards and curricula, advises on how to master biological concepts and understanding, how to communicate with students in biology classes, when and why are effective visual and practical methods. It acquaints the reader with the issue of setting goals for biological education in the cognitive, psychomotor and affective areas in relation to formative and summative assessment. Hopeful as well as experienced teachers will find in this publication not only a look into the history of teaching biology, but also a look into the future. Current trends in biology teaching, the connection of teaching with digital technologies, the virtual learning environment and interactive simulations and models belong to science lessons today.

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E-book

Janetta Nestorová Dická

The university handbook Elementals of Population Geography and Demography - Part I, as an introduction to population studies, is primary study material for students of the geography study program, as well as for students of the Information Systems in Public Administration study program at the Pavel Jozef Šafárik University in Košice, but also for the wider public interested in about population phenomena and their spatiality. Among other things, the handbook offers the latest population reports in the world and its regions. The aim of the handbook is to introduce young geographers to the basics of population research, which includes the most frequently used tools and methods in geographic analysis. The first part of the handbook contains an introduction to the scientific disciplines of population geography and demography with an overview of basic sources of demographic data. The next part discusses the issue of anthropogenesis, i.e. the development of humans from our ancestors and the spatial spread of humans across our Earth. Part of this part is the recent development of the world population and changes in the size and distribution of the global population over time. The last part analyses how the population is distributed in the world and in relation to the geographical components of the space.

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E-book

Juraj Ševc - Anna Alexovič Matiašová

U študentov jednoodborového a medziodborového štúdia biológie na fakultách s prírodovedným zameraním veľakrát vzniká pri štúdiu predmetu Anatómia človeka problém s definovaním rozsahu učiva. Predložený študijný materiál si kladie za cieľ zorientovať študentov nelekárskych vedných odborov v rozsiahlej anatomickej terminológii a ohraničiť množstvo požadovaných anatomických pojmov na optimum, aby študentom ostala popri osvojení si latinského názvoslovia dostatočná kapacita aj na zapamätanie ďalších poznatkov z oblasti systémovej, porovnávacej, vývinovej a funkčnej anatómie. Dôraz na usporiadanie jednotlivých anatomických termínov do logických celkov zároveň podporuje hierarchický pohľad na architektúru ľudského tela. Napriek zdanlivej samoúčelnosti sa tak anatomická terminológia stáva kostrou, na ktorú študent v priebehu ďalšieho štúdia nabaľuje vedomosti z viac alebo menej príbuzných vedných odborov študujúcich ľudské telo  a procesy, ktoré v ňom prebiehajú. Zároveň popri tejto ambícii presahujúcej rámec vedného odboru anatómie, nadväzujú Anatomické termíny na dlhú tradíciu anatomických repetitórií s rešpektovaním platného latinského a slovenského anatomického názvoslovia.

Skriptum predstavuje praktický doplnok ku vysokoškolským učebniciam Anatómie alebo Neuroanatómie a najmä k anatomickému atlasu, rozhodne však nemá ambíciu ich nahradiť. Nájdete tu pohromade všetky potrebné termíny, ktoré môžete mať vždy poruke vo svojom telefóne, čítačke alebo notebooku. Dôraz na usporiadanie jednotlivých anatomických termínov do logických celkov podporuje hierarchický pohľad na architektúru ľudského tela a zaradenie krátkeho úvodu ku každej sústave Vás má podnietiť k vyhľadaniu ďalších, podrobnejších informácii o stavbe a funkcii danej orgánovej sú-stavy.

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 Ľubomír Panigaj - Peter Ľuptáčik 

(Náčrt systému a fylogenézy)

Učebný text je primárne určený pre študentov jednoodborového štúdia biológie a všeobecnej ekológie, ako aj odborom učiteľského štúdia v rôznych kombináciách s biológiou. Venuje sa v nich opisu jednotlivých skupín živočíchov, ich morfológiu a anatómiu ilustruje na obrazových materiáloch. K jednotlivým morfologickým a anatomickým štruktúram sa v texte nevyjadrujeme podrobnejšie, nakoľko text nadväzuje na predmet Porovnávacia morfológia živočíchov, kde na úrovni organológie boli tieto najvýznamnejšie štruktúry v rámci prednášok a cvičení detailne vysvetlené a opísané. Rozsah učebného textu nie je veľký, podávame v ňom základné minimum poznatkov, čo je podmienené jednak rozsahom predmetu, ktorý je len jednosemestrový, jednak tým, že ďalšie, špecializované predmety rozširujú spektrum poznatkov napr. na úrovni entomológie, hydrobiológie alebo pôdnej biológie. V zavere niektorých kapitol formulujeme niekoľko cvičných otázok, ktoré si študenti môžu na základe predchádzajúceho textu zodpovedať, s podobnými otázkami sa totiž môžu stretnúť na skúške alebo na štátniciach.

Autori

E-book

Ondrej Hutník

The concept of the integral is one of the most significant concepts in mathematics as a whole. In its most primitive form, it was already used by the ancient Greeks in the creation of Euclidean geometry. However, it was only after Descartes' work on analytical geometry in 1637 that mathematicians could begin to consider the integral as a subject of analysis. Descartes' work laid the groundwork for the discovery of infinitesimal calculus by Leibniz and Newton around 1665. At that time, a great dispute arose over the priority of this discovery, dividing scholars of Germany and England into two opposing camps, each favoring their own champion. Today, we know that Newton's work on fluxions and fluents was somewhat earlier, but Leibniz's notation and approach have gained more acceptance in the mathematical world, and the symbols ∫ ∫ and d d are still used today. A brief overview of the history of the integral will be presented in Chapter 1.

Today, there is a plethora of scripts, textbooks, and books dedicated to explaining the concept of the integral. Therefore, every potential author faces the initial question of whether to write another text on this topic. Our affirmative answer to this question was driven by the students' request to find the subject matter of a part of the winter semester of the second year presented in a coherent form. The second motivation is a slightly different approach to the topic. If we consider the methods typically used in solving problems and gaining routine with a certain integral, it mainly involves the Newton-Leibniz formula, and often there is little time left to compute the definite (Riemann) integral using its definition. Therefore, we included a discussion of the Newton integral in Chapter 2, which reflects this fact and is directly related to the indefinite integral, whose various calculation methods receive relatively much attention in the previous semester. Only after that, in Chapter 3, do we build the theory of the Riemann integral, present criteria for its existence, classes of integrable functions, basic properties, and finally its relationship with the Newton integral. Questions primarily concerning geometric applications are addressed in Chapter 4, and in the final chapter, we focus on extending the Riemann integral to unbounded functions and unbounded intervals.

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Matúš Harminc

Učebný text je určený poslucháčom medziodborového štúdia v kombinácii s matematikou, jednoodborového štúdia matematiky ako aj rozširujúceho štúdia matematiky. Je zameraný na základné poznatky o deliteľnosti celých čísel, kongruenciách a aritmetických funkciách.

Autor

E-book

Ivana Sotáková-Martin Vavra-Mária Ganajová

This textbook has been designed for the master students of chemistry teaching (combined) at the Faculty of Science, Pavol Jozef Šafárik University in Košice as a source of model school experiments in general and inorganic chemistry. It will be used for teaching the Special Practice of School Experiments I compulsory course. It consists of instructions for experiments related to the selected topics in general and inorganic chemistry as well as the didactic and technical aspects of their performance. Each experiment includes an explanation of the principle, specification of the tools and chemicals needed, working procedure, and the respective apparatus assembly scheme. At the end of each experiment, the observation and explanation necessary for the correct interpretation of the results of the chemical experiment performed are provided. To follow the requirements for the digital transformation of education, selected computer-aided experiments and visualiser projections have been included as well. The next part is focused on the work with the monitoring suitcase, which can be used for making simple field experiments related to environmental topics. The final part is dedicated to attractive experiments that complement the topics in inorganic chemistry and can be used to motivate students. All experiment instructions are in line with the requirements specified by the state educational programmes for primary and grammar schools. This book allows teachers to select appropriate demonstrative experiments or experiments for laboratory classes performed by students themselves. The videos of selected experiments are also available as part of the interactive periodical table of elements operated by the Institute of Chemistry, Faculty of Science, Pavol Jozef Šafárik University in Košice.

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E-book

Slávka Hamuľaková

The textbook "Structure and reactivity - solved examples and tasks, part 1" is the basis for teaching the subject "Structure and reactivity" for students of the 1st year of master's studies at the Faculty of Science, UPJŠ, department of Organic Chemistry. The textbook is divided into individual chapters, each chapter offering students examples of chemical reactions, where their course is explained on the basis of appropriate reaction mechanisms. A substantial part of the textbook consists of unresolved tasks, the main goal of which is the development of students' knowledge and skills. Due to the fact that the textbook is focused on only one semester of study, it cannot cover all reactions, rather it is only representative examples of different types of reactions, such as: addition reactions, elimination reactions, aromatic substitution, addition-elimination reactions, radical reactions and pericyclic reactions.

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E-book

Mária Vilková - Zuzana Kudličková - Aneta Salayová - Tomáš Ján Liška

The Nuclear Magnetic Resonance Practicum – Part 1: Quantitative NMR is designed for students taking the NMR Practicals course, which focuses on the practical aspects of quantitative nuclear magnetic resonance (qNMR). This publication builds on previous NMR courses and assumes basic theoretical knowledge of the method, emphasizing experimental procedures, data processing, and result interpretation. qNMR is a precise analytical technique with broad applications in analytical chemistry, pharmaceutical research, biomedicine, and quality control. The script provides a detailed guide to conducting experiments, as well as procedures for analyzing and evaluating acquired data. This publication offers students methodological guidance and support in mastering qNMR analysis and serves as a valuable resource not only during their studies but also for further research in NMR spectroscopy.

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E-book

Renáta Oriňaková(ed.)

Trends in chemistry, research and education at Faculty of
Sciences of P.J. Šafárik University Košice

November 4, 2016, Faculty of Natural Sciences, Pavol Jozef Šafárik
University, Košice, Slovakia

Organized by:
Faculty of Natural Sciences
Pavol Jozef Šafárik University in Košice
Slovak Chemical Society

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E-book

Jana Shepa  (ed.)

The book of abstracts from 8th International Conference on Novel Materials: Fundamentals and Applications, NFA 2023 is composed of contributions from the participants of this international conference. The conference consisted of 6 invited lecture and 38 abstracts of participants. The conference is focused on novel materials and its application in various research areas. All contributions are professionally processed and inspiring.

Download the e-book for free(pdf)

E-book

Renáta Oriňáková (ed.)

Book of abstract

Download the e-book for free (pdf)

E-book

Adriana Zeleňáková

One of the fundamental characteristics of the magnetic state of ferromagnetic materials is the existence of a domain structure. The university textbook "MAGNETIC DOMAINS: SPECIAL PHYSICAL PRACTICE 1" is intended primarily for students of the Master's programme in Physics of Condensed Matter FKLm and for the PhD programme in Progressive Materials PMd within the profile subject Special Practice 1 at the Institute of Physical Sciences of the Faculty of Sciences of the Pavol Jozef Šafárik University in Košice.  The textbook is divided into seven chapters. The first chapter is devoted to the basics of domain theory, including the history of domain observation and the specification of different types of energies in ferromagnetic body. The second chapter presents the relationship between domain structure and magnetisation processes in ferromagnetic materials The third chapter describes the different types of domain-wall interactions with the defect. The fourth chapter illustrates examples of domain structure in selected ferromagnetic body such as grain oriented and non-grain oriented electrical steels, amorphous and nanocrystalline ribbons. The fifth chapter summarises an overview of the different experimental methods used to visualise the domain structure and their advantages or disadvantages with respect to the structure of ferromagnetic materials. The last two chapters, the sixth and the seventh, are devoted to specific experimental tasks for observing the domain structure of a selected polycrystalline sample using the optical microscope Bitter powder method and the MFM (magnetic force microscopy) method. During the preparation of this undergraduate text, its individual parts were developed using the foreign language literature listed in the recommended references.

Download the e-book for free (pdf)

E-book

Norbert Kopčo

Neuroscience is an interdisciplinary field of science at the interface of biological, psychological and computer sciences, which aims to describe the functioning of the brain and mind. Computational and cognitive neuroscience are subfields of neuroscience focused on the study of information processing in the human and animal nervous systems, and on the theoretical description of the brain and mind. This university textbook contains several assignments that provide an overview of the methods used in computational and cognitive neuroscience, with an emphasis on mathematical modeling and on the behavioral study of cognitive processes. The textbook builds on the author's previous works.

Download e-book for free (pdf)

E-book

Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

Download the e-book for free  (pdf)