Cell Biophysics II

E-book

Janka Vrláková - Stanislav Vokál

Atomic and nuclear physics are relatively young scientific disciplines forming the final part of the general physics course at the Faculty of Physics of the Jagiellonian University. Their aim is to explain the nature of the basic physical properties of atoms, atomic nucleus and elementary particles.

This is also the content of the lectures and exercises ‘General Physics IV’ in the 2nd year of the Bachelor's degree in Physics at the Faculty of Natural Sciences (PF) of the P.J. Šafárik University (UPJŠ) in Košice. They are followed by optional lectures ‘Nuclear Radiation in the Environment’, ‘Introduction to the Physics of the Microworld’ in the 3rd year of the Bachelor's degree of single-discipline study of physics, or teacher study of physics in combination with another subject, and ‘Subnuclear Physics’ in the 1st year of the Master's degree of teacher study of physics in combination with another subject.

In the aforementioned lectures, the latest experimental findings on the structure and behaviour of the microworld are presented by means of physical theories and their subsequent experimental verification in experiments.

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Peter Fedoročko a kol. 

Vysokoškolský učebný text Prírodovedeckej fakulty UPJŠ.

E-book

Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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E-book

Milan Žukovič

This textbook is intended for master's degree students and is a follow-up to the Computational Physics I course studied at the bachelor's level. The content of the textbook Computational Physics II focuses on stochastic methods of solving physical problems, mainly on Monte Carlo (MC) simulation of many-particle systems.

The focus on this computationally intensive approach is motivated by the gradual increase in the computing capacities of ordinary computers as well as the introduction of high-performance computing clusters. This has led to significant progress in the development of new simulation techniques, thanks to which MC simulations have found application in various areas of research and application practice. Considering the main research focus of the department, this text is particularly devoted to the presentation of basic and more advanced MC simulation techniques applied to a simple Ising spin model in order to investigate its magnetic, thermodynamic and critical properties.

The next part is devoted to MC simulations of random processes. It focuses on the simplest but also the most basic random walk process and demonstrates its applications in financial analysis and the solution of a quantum system described by the time-dependent Schrödinger equation. The last part is dedicated to the basics of molecular dynamics, applied to simulating the classical movement of atoms in a given force field. By mastering the problems addressed in this course, students will obtain a potential tool for working out of their diploma theses, or a methodology useful for their further scientific and research practice in the field of investigating of complex systems.

The lectured topic is subsequently exercised in the form of preparing projects implemented in the freely distributable software Octave, which is easy on the user's programming skills and which students have the opportunity to familiarize themselves with in the previous study.

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Gabriela Andrejková - Ľubomír Antoni

Machine learning addresses the issues of how computer programs recognize complex patterns and make decisions based on data. In these university textbooks, we focus on theoretical knowledge in the field of machine learning in which we present the creation of concepts for objects, the preparation of concepts, hypotheses and the process of learning from examples. We describe Boolean formulas and their representations, probabilistic learning, linear and logistic regression, linear modeling and classification. Clustering and the Bayesian approach to machine learning conclude this publication.

University textbooks are intended for students of master's degree programs in computer science.

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E-book

Marek Bombara

The collection of exercises summarises and supplements the exercises realised at the Pavol Jozef Šafárik in Košice within the lecture course Elementary Particle Physics. The collection is intended for the master students of the Nuclear and Subnuclear Physics subject, but it could be beneficial also for other physics subjects or even for interdisciplinary study. 

The division of chapters roughly copies the order of lectures. At the beginning, students will briefly familiarize themselves with the basics of special relativity and its practical use in particle physics.

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E-book

Jana Shepa (ed.)

The book of abstracts from the second year of the international conference Spring electrochemical meeting is composed of contributions from the participants of this student conference.

The conference consisted of one invited lecture and ten competing student lectures. The message of this meeting is to create a dialogue between students of electrochemistry and the mutual exchange of knowledge. All contributions are professionally processed and inspiring.

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E-book

Alena Gessert

Caves have always been very specific places throughout history. In some cultures, they served as sites for sacrifices or remembrance, while in others, they were seen as places where one could cross to the "other side of life." People used caves for shelter, as places to leave messages, to wait out bad weather, and in some cases, even lived in them. During wars in our region, entire families or villages would hide from enemies in caves, or they would use them to conceal weapons.

Today, in most countries, caves are destinations for tourists who want to experience something new and unknown: darkness, high humidity, and the fascinating beauty of underground formations. They are also sought after by cavers who long to explore caves, enter worlds where no human has set foot before, find evidence of previous habitation, or conduct research that continually advances our knowledge.

In the publication you are holding, we present both traditional and less conventional topics about the formation of karst and caves, selected ecological aspects, maps and their creation, significant caves of the world, and the life of people in such areas. We also offer an overview of important karst locations that are definitely worth learning more about or visiting in person. This publication is intended for readers among pupils, students, teachers, and the general public, and we believe it will draw you into this mysterious world.

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Jozef Strečka - Hana Čenčariková - Andrej Gendiar (eds.)

The proceeding involves programme and abstracts of Workshop on Quantum Magnetism: Theoretical Challenges and Future Perspectives, which was held on June 7th – June 8th, 2019, in Košice, Slovakia.

The workshop is organized by Faculty of Science of Pavol Jozef Šafárik University in Košice and Institute of Experimental Physics of Slovak Academy of Sciences in Košice under the financial support of Slovak Research and Development Agency.

The main conference topics are devoted to state-of-the-art problems of Quantum Theory of Magnetism inncluding molecular magnetism, highly frustrated magnetism, magnetic phase transitions, quantum spin liquids, strongly correlated systems, exotic quantum states, flat-band systems and quantum entanglement.

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E-book

Martin Bačkor - Silvia Mihaličová (eds.)

Proceedings of the 11th Conference of Doctoral Students in Experimental Plant Biology and the 13th Conference on Experimental Plant Biology, Košice, September 9–13, 2013

13th Conference of Experimental Plant Biology (Sections)

1. Cell Biology and Cytology: Michal Martinka
2. Developmental Biology and Morphogenesis: Alexander Lux
3. “Omics” – Genomics, Transcriptomics, and Proteomics: Boris Vyskot
4. Hormonal Regulation of Plant Growth and Development: Jana Albrechtová
5. Photosynthesis, Assimilate Production, and Transport: Jiří Šantrůček
6. GMOs and Plant Biotechnology: Eva Čellárová
7. Biophysical Signals and Optical Properties of Plants: Jan Nauš Stress
8. Physiology: Ľudmila Slováková
9. Plant Interactions with Organisms: Martin Bačkor
10. Water and Mineral Nutrition of Plants: Miroslav Repčák
11. Productive Biology of Plants and Agriculture: Václav Hejnák
12. Ecological Plant Biology and Global Climate Change: Michal Marek

11th Days of Doctoral Students in Experimental Plant Biology (Sections)

1. Molecular & Cell Genetics: Viktor Žárský
2. Developmental Biology: Alexander Lux
3. Biochemistry & Physiology: Jiří Šantrůček
4. Systematics & Evolution: Jana Albrechtová
5. Ecophysiology: Jana Albrechtová

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Adriana Zeleňáková

Magnetic nanoparticles are extremely interesting magnetic objects that still hide much that is undiscovered, both because of their physical properties and because of their diverse applications. Iron nanoparticles, or iron oxides, are used in medical diagnostics for magnetic resonance imaging, in the treatment of hyperthermia, and an important application is the use of magnetic particles for targeted drug delivery.

The textbook "Magnetic Nanoparticles: Nanomagnetism, Preparation and Advanced Applications" is intended primarily for students of the Master's programme in Physics and students of related disciplines at universities and faculties with a physical, chemical, metallurgical and biophysical focus. The motivation for writing this textbook was to develop study material that would contribute to improving the quality of teaching in the profile subject Nanomaterials and Nanotechnology at the Institute of Physical, Faculty of Sciences, UPJŠ, in the Master's programme Condensed Matter Physics, as well as in the profile subject in the PhD programme Advanced Materials.

The university textbook is divided into eight chapters. The first and second chapters are devoted to basic information about magnetism, the origin of nanomagnetism in nanoparticles and surface phenomena. The third and fourth chapters are devoted to nanomagnetism in nanoparticle systems. The fifth chapter describes in detail individual protocols for investigating the phenomenon of superparamagnetism and the phenomenon of superspin glass using the SQUID device. The sixth chapter describes individual procedures for the preparation of magnetic nanoparticles and the seventh chapter describes individual experimental techniques for the study of magnetic nanoparticles. The final eighth chapter describes the applications of nanoparticles in biomedicine.

During the writing of this textbook, the chapters were prepared using the foreign-language specialist literature listed in the recommended reading list.

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E-publication

Denisa Maceková-Monika Václavková-Marek Kvet-Ivana Sotáková
The Digilib Digital Library of Formative Assessment Tools – User Guide, Part A introduces the Digilib application as the key component of the library, designed to support the implementation of formative assessment in teaching at all levels of education. It explains the structure of the system, its modules, the principles of user roles, and the possibilities for working with the digital formative assessment tools. Particular attention is paid to the possibilities for creating, editing, and assigning the tools to students, as well as to providing personalised real-time feedback. The User Guide also explains how the Digilib application is interconnected with the affiliated applications Digiform and Digilib Images, which expand the possibilities for creating and visualising assessment tools. The guide is intended for teachers at all levels of education, student teachers, school administrators, and digital coordinators who are interested in the systematic use of the Digilib digital library to support the implementation of formative assessment, enhance the quality of the educational process, and foster the development of students’ self-assessment and reflective competences.
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 Andrej Oriňak - Renáta Oriňaková - Andrea Fedorková

Nanotechnology represent the fastest developing science in the present. They are based on the technologies that enable the matter manipulation at atomic level. Nanotechnology offer prepartion of the new materials with unknown and very specific properties and functions.Recent nanotechnology still stay in formative phase of their development. But more and more they are visible with nano-specific phenomenons in the fundamental control of the properties as well mater behaviour. This is quite possible that without nanotechnology will not work any science to the future, moreover that science will not exist anymore. Nanotechnolgy will give a chance and force to transform world to more environmental and comfortable. Expected is expansion of the nanotechnolgy to molecular nanosystems – heterogenous nets, in which molecules and supramolecules work as the nanodevices. The computers and robots will be reduced to the small and ultrasmall dimensions. In medicine will foremost the application of nanotechnology in genetic therapy and elimination of ageing. Nanosurgery will work at molecular level, cancer cells will be identified early and filtered , then substituted with healthy and unchanged. It is necessary to inform university or high school students  about principles of nanotechnolgy, preparation of the nanostructures, functionality of them and to offer full representation about molecular systems and nanodevices; the methods of nanostructures characterization and about application in miniaturized systems. 

Authors

Danica Studenovská a kol. 

Táto zbierka úloh je určená poslucháčom Prírodovedeckej fakulty UPJŠ, ktorí sa v rámci predmetu Matematika I. zoznamujú s pojmami funkcie, limity, derivácie, integrálu a ich aplikáciami. Ide najmä o študentov nematematických odborov a učiteľských kombinácií, avšak táto zbierka je vhodná aj pre iných študentov a záujemcov o základy matematickej analýzy.

Autori

E-book

Jana Shepa (ed.)

The book of abstracts from 7th International Conference on Novel Materials: Fundamentals and Applications, NFA 2023 is composed of contributions from the participants of this international conference. The conference consisted of 3 invited lecture and 40 abstracts of participants. The conference is focused on novel materials and its application in various research areas. All contributions are professionally processed and inspiring.

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E-book

Martin Bačkor - Miriam Bačkorová

The proposed text focuses on the history of studying biology, medicine, and pharmacy as scientific disciplines from prehistoric times through antiquity, the Middle Ages, and the modern era. The text chronologically organizes the most significant figures in the history of biological scientific disciplines, outlines key characteristics of major historical discoveries, and reevaluates their significance from the perspective of 21st-century science.

The educational text is chronologically divided into the most significant periods of civilization development. The last two completed centuries—the 19th and 20th—are subdivided into major life science fields due to the unprecedented growth of biological disciplines and the resulting volume of acquired information.

Since it can sometimes be challenging in science to define what constitutes the past versus the present of a particular discipline, we have excluded significant biological discoveries from the early 21st century, which are typically regarded as the “present” of biology.

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