Biology & Ecology (e-books)

E-book

Andrej Mock

The structure of the animal body is extremely varied. Each species has its distinctive morphological features, which bears as a testimony to long-term development and belonging to the developmental lineage. At the same time, the body has been tested for a long time by natural conditions, resulting in unique adaptations to the environment and life strategy. Despite this admirable variety - which includes both recent and fossil animals and which we have far from mapped – a comparison of body parts brings knowledge we can generalize: the main building principles, and boundaries within which phenotypic diversity is realized.

Comparative animal morphology today uses the latest methodological material and knowledge from other disciplines, from genetics, molecular biology and experimental embryology, through progressive imaging methods (e.g. electron microscopy, computer micro-tomography) and the possibilities of subsequent software processing of image material (measurement, staining, etc.) to the view of physics, chemistry, statics and geometry on the structures (to nanostructures) of the living body. Detailed knowledge of historical and contemporary conditions on Earth is an important interpretative context in the study of animal morphology. Surprisingly, the knowledge accumulated after centuries of research is now rapidly supplemented by new knowledge, and often the traditional knowledge is subsequently reinterpreted. Finally, and no less important, in studying animal (and human) morphology, we learn surprising knowledge about ourselves.

The author of the presented textbook had the ambition in a simplified form to introduce the reader, especially the student of biological studies, into a dynamic and fascinating scientific discipline, as the current comparative animal morphology is.

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E-book

Gabriel Žoldák

The textbook is intended as background material for university students and for education in science, biotechnology, and medicine. During the textbook conception, the emphasis was on recent trends and development in the understanding of the physicochemical properties of immunoglobulins.

The textbook is divided into ten chapters and 294 pages dealing with the following topics: Immune system and immunoglobulins, General properties of immunoglobulins, Chemical and proteolytic cleavage of immunoglobulins, Structure of immunoglobulins I, Structure of immunoglobulins II, Detection of immunoglobulins, Post-purification and purification immunoglobulin modifications, Immunoglobulin stability and aggregation, Therapeutic immunoglobulins. In addition to the summary of the established knowledge about the properties of immunoglobulins, the textbook also contains new information collected from recent scientific publications.

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E-book

Terézia Kisková - Stanislav Matéffy - Františka Horváthová

The laboratory rat (Rattus norvegicus) is one of the most commonly used experimental animals. It serves as a model organism for analyzing numerous biological processes and pathological mechanisms, such as cardiovascular diseases, metabolic disorders (e.g., lipid metabolism, diabetes mellitus), neurological and neuropsychiatric conditions (e.g., stroke, epilepsy, or Alzheimer's disease), neurobehavioral research, autoimmune diseases (e.g., arthritis), cancer, and renal diseases. It offers many unique advantages for modeling human diseases, testing drugs and natural substances, and studying responses to environmental factors. The size of the laboratory rat, compared to the mouse, creates ideal conditions for physiological manipulations. Additionally, rats are used in clinical toxicology to test chemical substances (Hedrich, 2000).

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E-book

Katarína Cechlárová (ed.)

This year, the Student Scientific Conference was held on April 24, 2019, across 17 sections in disciplines such as biology and ecology, chemistry, physics, geography, mathematics, informatics, and their didactics. Bachelor’s and master’s students presented a total of 124 contributions. The most successful participants advanced to national or traditional Czech-Slovak student scientific showcases in fields like physics, chemistry, mathematics, informatics, and mathematics didactics.

In addition to faculty students, 10 high school students participated outside the competition. They were invited based on their achievements in subject-specific Olympiads or because they were already engaged with the faculty under the guidance of dedicated teachers in laboratory work as part of their preparation for future studies. The day also featured a programming competition with 23 participants, an IHRA contest involving 16 teams of high school students and 15 teams from elementary schools, and a new Puzzle section where 72 high school students from the region competed.

The abstracts from the Student Scientific Conference demonstrate that our faculty's students not only absorb theoretical knowledge delivered in lectures but also actively engage in solving partial scientific problems that align with research objectives at the institutes of PF UPJŠ. This collection serves as both a record of scientific activity at the faculty and a dignified presentation for the broader public.

Prof. RNDr. Katarína Cechlárová, DrSc.

Vice-Dean for Education

Doc. RNDr. Gabriel Semanišin, PhD.

Dean of the Faculty

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Marcel Uhrin - David Jandzik - Andrej Čerňanský - Michal Rindoš - Blanka Lehotská - Stanislav Danko - Ján Kautman - Peter Mikulíček - Peter Urban - Daniel Jablonski

Bibliographies provide basic scientific information, illustrate quality and intensity of research in a particular topic, area, or time, and thus help build a cultural-historical perspective of society’s appreciation of knowledge and education. Here we provide a bibliography of herpetological research in the region of Slovakia between the years 1791 and 2017. We collected 2,183 references authored by 1,453 different authors and covering all species of amphibians (18) and reptiles (13) occurring in Slovakia and, in addition, amphibian and reptile taxa occurring in 94 other countries.

Most of the contributions were published in popular magazines and non-indexed journals, while only about 12% of all references represent scientific articles from journals indexed in relevant scientific databases. The extensiveness of study on amphibians and reptiles has varied among different periods within the selected time frame. However, an obvious intensification in the field of herpetology can be observed, especially during the second half of the 20th century. While there have only been few professionals specialized in herpetology, an important role in promoting the research and conservation of amphibians and reptiles in Slovakia has been played by non-governmental organizations and hobbyists. The most frequent type of herpetological data in the referenced literature comes from faunistic research, followed by conservation and general information on herpetofauna, with the majority of published articles in indexed journals coming from the fields of palaeontology, phylogeography, and population genetics.

The presented bibliography is the first step towards building a solid base for future systematic herpetological research in the country and Central Europe.

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E-book

Andrej Mock

Burda - Kováčov, Slovensko, 4.-7.10.2017

Abstracts of lectures by Czech and Slovak zoologists, ecologists, and physiologists, who study soil arthropods in the taxa Myriapoda and Oniscidea as model groups, presented at the 10th seminar in Kováčová near Chľaba, Slovakia.

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E-book

Tatiana Kimáková - Vladimír Pavlík

The scientific monograph focuses on the characteristics of free radicals, reactive oxygen and nitrogen species, oxidative stress, and its impact on various diseases. A significant portion is dedicated to antioxidants, their classification based on multiple criteria, the characteristics of selected antioxidants in terms of their functions, manifestations of their deficiency and excess, and the overall antioxidant capacity of the body.

A special section is devoted to enzyme-based antioxidants, natural sources of antioxidants in the form of vitamins, trace elements, flavonoids, polyphenols, and coenzyme Q10. To provide a clearer understanding of antioxidants and their influence on population health, the monograph presents results from a research project included in the program "Research Support for Enhancing the Defense Capabilities of the Czech Republic in NATO Structures."

The research was conducted between 2010 and 2012 as part of preventive rehabilitation programs for professional soldiers with a sports component. The study involved 218 professional soldiers, including 180 men and 38 women, with an average age of 33.3 years. The current health status and dietary habits of the soldiers were assessed using questionnaires.

The study described the saturation of the observed group with antioxidant vitamins and statistically evaluated the relationship between their levels and the risk indicators for the development of cardiovascular diseases. Individual analyses were performed using the Reflotron device calibrated with Reflotron Precinorm control serum. Following blood collection, all participants underwent anthropometric examinations (body weight, height, waist circumference), blood pressure measurements, heart rate monitoring, and physical fitness assessments through simple functional tests.

This scientific monograph is suitable for the scientific community, students of medical, veterinary, and natural sciences, as well as public health students at all levels of university education. It is also intended for informed members of the public.

Authors

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E-book

Tatiana Kimáková

This scientific monograph is a comprehensive scientific work focused on the presence and effects of mercury in the environment, as well as the health risk factors associated with it.

The monograph presents a characterization of mercury in a multidisciplinary scope, discusses its use in industry and healthcare, and describes the negative impacts of mercury on the environment and public health. It also provides proposals and recommendations for at-risk groups. The monograph includes a comprehensive study of mercury concentration in samples of domestic and foreign production commodities and plant samples using the atomic absorption spectrometer AMA 254.

This scientific monograph is suitable for the scientific community, students of medical, veterinary, natural sciences, and agricultural fields, as well as public health students at all three levels of university study. It is also intended for all interested members of the informed public.

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E-book

Daniela Kladeková

This university text is intended for students of chemical and ecological sciences at the Faculty of Natural Sciences of the P. J. Šafárik University in Košice and is intended to serve as a tool for experimental exercises in colloid chemistry. Colloid chemistry is an important part of the theoretical basis of the chemical sciences and belongs to the newer interdisciplinary fields of natural sciences.

It combines knowledge from physical chemistry, physics and biology, while also drawing on a solid knowledge of mathematics and other scientific disciplines. Experiments are often essential in understanding the problems of colloid chemistry, modelling ideas about the phenomena and laws involved in the discipline. This is why active participation in experimental exercises is so important and essential to mastering the material in colloid chemistry.

In selecting the tasks for these scripts, it was also necessary to respect the considerable limitations imposed by the possibilities of the laboratory instrumentation and material equipment of our department. Despite this limitation, however, they can illustrate to students the basic theoretical physicochemical principles of colloid dispersion systems and, importantly, their understanding can contribute to the understanding of some of the more important peculiarities of colloidal phenomena.

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E-book

Božena Mihalíková - Ján Ohriska

This text is intended for first-year students in 76-12-8 ‘General Education Teaching’ in combinations with mathematics. It is based on the authors' lectures and their more than ten years of experience in teaching this subject at the Faculty of Education of the University of Applied Sciences. When writing it, the authors tried to take into account the specificity of mathematics teaching studies.

The present teaching text was not written due to the lack of textbooks on mathematical analysis. The reason for writing it was the authors' findings that the students do not have sufficient experience in working with specialized literature from secondary school, the difficulties for many of them (especially in the first semesters) are caused by even a slightly different interpretation, not rarely also by a change in labeling, which makes them miss the essence of the studied problem. The authors of the text did not set out to be original. Their aim was to make such a selection of topics as is necessary for a future teacher of mathematics and to choose such a method of interpretation which, in their opinion, is suitable for first-year students.

A good mastery of the curriculum (expansion of the mathematical apparatus and the related possibilities of applying other methods of proof as well as the acquisition of the necessary numerical skills) presupposes the use of other literary sources (textbooks, collections of problems) according to the teacher's recommendation.

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E-book

Peter Paľove-Balang

The text ‘Uptake and transport of mineral substances in plants’ in Slovak language provides a general overview of the uptake and distribution of substances in an easy-to-understand form.

The individual chapters introduce students to the properties of the soil environment, which have a significant influence on the availability of substances, as well as the transport of substances across membranes and over medium and long distances. The text contains the latest findings from the English literature, supplemented by diagrams and graphs created by the author on the basis of his own research or by compiling several sources.

The text is intended primarily for students of a master's degree in biology or ecology and assumes at least a basic knowledge of plant physiology.

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E-book

Jozef Kováčik

These "Exercise Manuals" present a concise overview of commonly used methodologies as well as progressive techniques, such as the use of liquid chromatography and fluorescence microscopy. Individual tasks were selected based on the research focus of the Department of Botany at the Faculty of Science, Pavol Jozef Šafárik University in Košice, particularly in the context of "stress physiology."

Some tasks can also be utilized within the subject "Plant Ecology." Chamomile (Matricaria chamomilla) is typically used as a model plant for individual tasks due to its long-standing history of research at the Department of Botany and its ease of cultivation under laboratory conditions. The chapters also briefly discuss the significance of monitored parameters, principles of their determination, and metabolism (formation or degradation), aiming to indicate their mutual context.

This approach highlights that determining an individual parameter cannot provide a general explanation for the overall causes and impacts of observed changes; however, it can serve as a basis for testing hypotheses at the level of other parameters.

For deeper study of specific issues, there is an abundance of high-quality international monographs and review articles available.

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E-book

Martin Bačkor - Silvia Mihaličová (eds.)

Proceedings of the 11th Conference of Doctoral Students in Experimental Plant Biology and the 13th Conference on Experimental Plant Biology, Košice, September 9–13, 2013

13th Conference of Experimental Plant Biology (Sections)

1. Cell Biology and Cytology: Michal Martinka
2. Developmental Biology and Morphogenesis: Alexander Lux
3. “Omics” – Genomics, Transcriptomics, and Proteomics: Boris Vyskot
4. Hormonal Regulation of Plant Growth and Development: Jana Albrechtová
5. Photosynthesis, Assimilate Production, and Transport: Jiří Šantrůček
6. GMOs and Plant Biotechnology: Eva Čellárová
7. Biophysical Signals and Optical Properties of Plants: Jan Nauš Stress
8. Physiology: Ľudmila Slováková
9. Plant Interactions with Organisms: Martin Bačkor
10. Water and Mineral Nutrition of Plants: Miroslav Repčák
11. Productive Biology of Plants and Agriculture: Václav Hejnák
12. Ecological Plant Biology and Global Climate Change: Michal Marek

11th Days of Doctoral Students in Experimental Plant Biology (Sections)

1. Molecular & Cell Genetics: Viktor Žárský
2. Developmental Biology: Alexander Lux
3. Biochemistry & Physiology: Jiří Šantrůček
4. Systematics & Evolution: Jana Albrechtová
5. Ecophysiology: Jana Albrechtová

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E-book

Vladimír Zeleňák (ed.)

The publication contains abstracts of contributions presented at the Student Scientific Conference of the Faculty of Natural Sciences at UPJŠ in Košice, held on April 25, 2013. The event was marked by the celebration of the 50th anniversary of the Faculty of Natural Sciences at UPJŠ and was part of a series of events called ScienceFest.

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E-book

Katarína Štrofeková

Cell Biophysics II is the one semester comprehensive course textbook for PhD students. It encompasses basic principles and mechanisms underlying cell physiology and biophysics with aims:

• General knowledge of the principles of cellular function, including membrane, cytoplasmic and nuclear roles in normal and abnormal conditions.
• In-depth understanding of the mechanisms underlying the cell functions at the molecular and subcellular level.
• Awareness of cell pathologies that lead to specific disease symptoms and phenotypes.
• The ability to apply learned principles to solve new problems (analysis & synthesis).

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E-book

Vladimír Zeleňák(ed.)

The proceedings contain abstracts of contributions from participants of the Student Scientific Conference of the Faculty of Science, Pavol Jozef Šafárik University in Košice, which took place on April 22, 2015.

The Student Scientific Conference (SSC) enjoys long-term popularity among the faculty's students and teachers, and we are pleased that this was no different this year, with 128 contributions submitted to the SSC.

The contributions were organized into 19 sections, additionally complemented by an open programming competition and the final of the IHRA contest. For many students, presenting at the SSC is one of the first opportunities to gain experience in presenting their results before a professional audience. Considering the number of submitted contributions, along with the members of the expert juries from the faculty's teaching staff and the audience who came to support their classmates' presentations, the SSC is an event where a large part of the student and academic community of the faculty meets at one place and time. Many abstracts presented in this proceedings were developed as part of students' work on partial tasks that are components of research projects at the departments of the Faculty of Science, Pavol Jozef Šafárik University.

The abstracts represent, in a way, an overview of research topics at the individual workplaces of the faculty. The SSC proceedings thus serve as a useful tool that students and faculty teachers can use to present the faculty externally to partners, employers, and potential collaborators. Partners from practice have shown interest in cooperating in organizing the SSC for a long time. Since 2005, the association of IT companies has awarded a Prize for the Most Original Work and a Prize for the Work with the Best Prospects for Practical Application.

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E-book

Miroslav Repčák - Martin Bačkor - Peter Paľove-Balang - Silvia Gajdošová

The establishment of the Plant Physiology Laboratory at the Department of Botany, Faculty of Arts, Pavol Jozef Šafárik University in Košice in 1969 was associated with the name of Ing. Štefan Kocúrik, CSc. (1923–2006), who also prepared the first "Instructions for Exercises in Plant Physiology" (Košice 1972, 1976).

Since 1980, the manual by Associate Professor RNDr. Karol Erdelský, CSc., and Ing. Fridrich Frič, DrSc., titled "Practicum and Analytical Methods in Plant Physiology" (Bratislava 1980) has been used. With the increase in the number of students, it became relevant in 1991 to publish the "Instructions for Exercises in Plant Physiology" again to improve preparation and the efficient organization of practical work. Associate Professor RNDr. A. Košturiak, CSc., contributed significantly to the expansion of the introductory part of the instructions with his valuable advice, for which the authors are grateful. For the fourth edition, some tasks were updated and modernized, taking into account the possibilities of the renovated laboratory. The selection of tasks was adapted to the current scope of exercises for individual plant physiology subjects within the bachelor's and master's study programs in biology and ecology. These subjects include: Plant Physiology, Plant Metabolism, Mineral Nutrition of Plants, Plant Growth and Development, and Plant Ecology. Some tasks are also suitable for high school experiments.

The choice of topics was influenced by the research focus of our workplace on secondary metabolism, ecophysiology, and medicinal plants. The instructions generally adhere to the SI unit system, occasionally including other commonly used units.

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Norbert Kopčo - Frederick Gallun - Beáta Tomoriová - Ľuboš Hládek(eds.)

Cognitive neuroscience is a fast developing scientific field which aims at uncovering the neural basis of human perception and cognition. To achieve this goal, cognitive neuroscience uses a variety of tools and approaches ranging from non-invasive brain imaging to psychophysics and neural modeling. Mastering such tools requires skills and knowledge from multiple scientific domains, including neurophysiology, cognitive psychology, and several computational fields.

Access on request via email: kogneuro (@) gmail.com

http://pcl.upjs.sk/workshopcd 

https://sites.google.com/site/kogneuro/