Praktikum z molekulového modelingu

E-book

Gabriela Andrejková - Ľubomír Antoni

Machine learning addresses the issues of how computer programs recognize complex patterns and make decisions based on data. In these university textbooks, we focus on theoretical knowledge in the field of machine learning in which we present the creation of concepts for objects, the preparation of concepts, hypotheses and the process of learning from examples. We describe Boolean formulas and their representations, probabilistic learning, linear and logistic regression, linear modeling and classification. Clustering and the Bayesian approach to machine learning conclude this publication.

University textbooks are intended for students of master's degree programs in computer science.

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Terézia Kisková - Stanislav Matéffy - Františka Horváthová

The laboratory rat (Rattus norvegicus) is one of the most commonly used experimental animals. It serves as a model organism for analyzing numerous biological processes and pathological mechanisms, such as cardiovascular diseases, metabolic disorders (e.g., lipid metabolism, diabetes mellitus), neurological and neuropsychiatric conditions (e.g., stroke, epilepsy, or Alzheimer's disease), neurobehavioral research, autoimmune diseases (e.g., arthritis), cancer, and renal diseases. It offers many unique advantages for modeling human diseases, testing drugs and natural substances, and studying responses to environmental factors. The size of the laboratory rat, compared to the mouse, creates ideal conditions for physiological manipulations. Additionally, rats are used in clinical toxicology to test chemical substances (Hedrich, 2000).

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Natália Raschmanová - Ľubomír Kováč

The text summarizes the basic knowledge about the functioning of the soil ecosystem with a focus on soil protists and dominant groups of soil animals. Characteristics of each soil animal group include basic morphology, ecology, distribution, population dynamics and their importance in the soil ecosystem. The aim of the text is to gain a basic understanding of the diversity and interactions of soil fauna with the soil environment. It deals with the ecological classification of soil fauna on the basis of body size, presence in the soil during the life cycle, food preference and by locomotion. It highlights important morphological and ecophysiological adaptations of soil fauna to physical and chemical environmental factors. The text also gives an overview of the basic methods in the field collection of soil fauna and their extraction from soil samples under laboratory conditions. It further informs on the method of taxonomic identification and ecological evaluation of soil fauna communities. Discusses the soil fauna of different types of ecosystems. It highlights the differences in soil fauna communities that inhabit grassland and forest habitats, and agricultural soils. This teaching material is intended for students in biology degree programmes.

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Norbert Kopčo - Frederick Gallun - Beáta Tomoriová - Ľuboš Hládek(eds.)

Cognitive neuroscience is a fast developing scientific field which aims at uncovering the neural basis of human perception and cognition. To achieve this goal, cognitive neuroscience uses a variety of tools and approaches ranging from non-invasive brain imaging to psychophysics and neural modeling. Mastering such tools requires skills and knowledge from multiple scientific domains, including neurophysiology, cognitive psychology, and several computational fields.

Access on request via email: kogneuro (@) gmail.com

http://pcl.upjs.sk/workshopcd 

https://sites.google.com/site/kogneuro/

E-book

Andrej Mock

The structure of the animal body is extremely varied. Each species has its distinctive morphological features, which bears as a testimony to long-term development and belonging to the developmental lineage. At the same time, the body has been tested for a long time by natural conditions, resulting in unique adaptations to the environment and life strategy. Despite this admirable variety - which includes both recent and fossil animals and which we have far from mapped – a comparison of body parts brings knowledge we can generalize: the main building principles, and boundaries within which phenotypic diversity is realized.

Comparative animal morphology today uses the latest methodological material and knowledge from other disciplines, from genetics, molecular biology and experimental embryology, through progressive imaging methods (e.g. electron microscopy, computer micro-tomography) and the possibilities of subsequent software processing of image material (measurement, staining, etc.) to the view of physics, chemistry, statics and geometry on the structures (to nanostructures) of the living body. Detailed knowledge of historical and contemporary conditions on Earth is an important interpretative context in the study of animal morphology. Surprisingly, the knowledge accumulated after centuries of research is now rapidly supplemented by new knowledge, and often the traditional knowledge is subsequently reinterpreted. Finally, and no less important, in studying animal (and human) morphology, we learn surprising knowledge about ourselves.

The author of the presented textbook had the ambition in a simplified form to introduce the reader, especially the student of biological studies, into a dynamic and fascinating scientific discipline, as the current comparative animal morphology is.

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E-book

Erik Čižmár

Textbook Automation of Laboratory Experiments in LabVIEW environment is devoted to the basics of graphical programming and shows the way how to communicate with measuring equipment and Arduino development boards in LabVIEW. The basic concepts of creating a virtual instrument and its interactive user environment are introduced. Three physical tasks are presented, the practical implementation of which takes place with the use appropriate instrumentation and LabVIEW. Practical tasks are dedicated to measuring the transmission characteristics of a low-pass RC filter, measuring the natural resonant frequency of a quartz tuning fork using the heterodyne pulse method, and mapping the magnetic field of a permanent magnet using Arduino.

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E-book

Renáta Oriňaková(ed.)

Trends in chemistry, research and education at Faculty of Sciences of P.J. Šafárik University Košice

November 4, 2016, Faculty of Natural Sciences, Pavol Jozef Šafárik University, Košice, Slovakia

Organized by:
Faculty of Natural Sciences
Pavol Jozef Šafárik University in Košice
Slovak Chemical Society

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E-publication
Beáta Valkay ed.
Ivana Slepáková-Andrej Mock a kol.

The textbook EFFUSE – River Landscape, Volume 1: Scientific Education for Everybody, developed within the EFFUSE project, explores the importance of water for living organisms and the specific features of water in the Transcarpathian region. It addresses the issue of water pollution and presents bioindication as an effective method of environmental research. The publication explains how the ecological status of rivers and water quality can be assessed using aquatic plants, insects, fish, and amphibians. It also raises awareness about the microbial composition of water and offers guidance on protecting oneself from waterborne infections. Finally, it highlights the significance of environmental education and awareness in strengthening the relationship between humans and the natural environment.

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E-book

Ivan Potočňák

The script is a study literature for the subject Chemical Calculations, which is a mandatory course in the bachelor's degree programs in Chemistry and Chemistry – Interdisciplinary Studies, first year. The script contains 10 chapters with a total of 207 pages, guiding students through solved and unsolved examples to help them understand the subject matter.

Author

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Miroslava Martinková

This electronic material provides the basic principles of creating a systematic nomenclature of organic compounds, from the simplest hydrocarbons to the more complicated nomenclature of carbohydrates. For some groups of derivatives, alternative ways of generating system names are also mentioned, as well as the most common trivial names that are still in use in the literature and in practice, in some cases being the characteristic (dominant) ones. In the introductory section, the basic rules to be respected when writing names of organic compounds are discussed. This document is intended primarily for interdisciplinary undergraduate and graduate students as support material for the courses Organic Chemistry and Selected Chapters in Organic Chemistry and Biochemistry. In the final section of this document, solved examples are given so that the student can check how the rules for forming the names of organic compounds have been understood.

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Mária Kožurková (ed.)

Book of Abstracts

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Rudolf Gális

The presented work provides basic knowledge of astronomy and astrophysics in a completely new multimedia format. The scope of the knowledge presented is mainly focused on stellar astrophysics and supplemented by cosmology beyond the title of the work.

A new approach in this work is the large proportion of visual materials, graphs, and video clips, contrasted with the brevity of the accompanying text. Such a form of presenting knowledge in this field is unprecedented in Slovakia, and therefore this work can be considered a completely innovative piece. It should be emphasized that the engaging form of the presented knowledge does not come at the expense of its content. The work contains all the necessary information that a physics student, especially one with a pedagogical focus, should master. The work can also be an invaluable aid to teachers in secondary and even primary schools, as well as professional astronomers in popularizing astronomical knowledge.

This suggests that the work covers a relatively wide range of needs at various institutions dealing with astronomy, from universities, through faculties of education and grammar schools, to observatories, planetariums, and astronomy clubs.

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Peter Paľove-Balang

The text ‘Uptake and transport of mineral substances in plants’ in Slovak language provides a general overview of the uptake and distribution of substances in an easy-to-understand form.

The individual chapters introduce students to the properties of the soil environment, which have a significant influence on the availability of substances, as well as the transport of substances across membranes and over medium and long distances. The text contains the latest findings from the English literature, supplemented by diagrams and graphs created by the author on the basis of his own research or by compiling several sources.

The text is intended primarily for students of a master's degree in biology or ecology and assumes at least a basic knowledge of plant physiology.

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Mária Vilková - Monika Garberová - Michal Goga

Nuclear Magnetic Resonance (NMR) is currently a widely used analytical tool that finds application in many fields of science and technology. The broadening of its practical use brings with it the necessity to create educational texts appropriate to the given scientific discipline.

This university textbook is intended for students of biology and serves as a supplement to the study materials for the advanced master's course "Biology of Lichens." At the same time, it represents a useful resource for master's and doctoral students involved in research, helping them interpret NMR spectra and present basic theoretical concepts.

The textbook briefly describes the important aspects of each NMR spectroscopic technique without delving excessively into the physical principles of individual methods or complex mathematical analyses. In this edition, the structures of lichen metabolites have been included, which students will isolate, purify, and identify using various analytical methods during practical exercises. An entire chapter is dedicated to a detailed description of solving the NMR spectra of isolated metabolites, with each step in elucidating the structures of both known and unknown metabolites explained in detail. The solved tasks are followed by numerous unsolved examples, including high-resolution 1D and 2D NMR spectra of metabolites, intended to further develop the acquired knowledge and skills of students and doctoral candidates in structure elucidation using NMR spectroscopy.

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Igor Hudec - Ľubomír Kováč 

The study course provides the basic knowledge on the fundamental parameters, relationships and processes in ecological sciences. Brief content: ecological factors and relations to environment (air, water, soil); influence of ecological factors upon organisms (morphological adaptations, behavioural responses); populations and communities (external and internal parameters of populations, population dynamics); ecosystems (impact assessment) and biomes (basic features and human impact); cycles (hydrologic, gaseous, sedimentation) of basic elements on Earth.  

Authors

E-book

Daniela Kladeková

This university text is intended for students of chemical and ecological sciences at the Faculty of Natural Sciences of the P. J. Šafárik University in Košice and is intended to serve as a tool for experimental exercises in colloid chemistry. Colloid chemistry is an important part of the theoretical basis of the chemical sciences and belongs to the newer interdisciplinary fields of natural sciences.

It combines knowledge from physical chemistry, physics and biology, while also drawing on a solid knowledge of mathematics and other scientific disciplines. Experiments are often essential in understanding the problems of colloid chemistry, modelling ideas about the phenomena and laws involved in the discipline. This is why active participation in experimental exercises is so important and essential to mastering the material in colloid chemistry.

In selecting the tasks for these scripts, it was also necessary to respect the considerable limitations imposed by the possibilities of the laboratory instrumentation and material equipment of our department. Despite this limitation, however, they can illustrate to students the basic theoretical physicochemical principles of colloid dispersion systems and, importantly, their understanding can contribute to the understanding of some of the more important peculiarities of colloidal phenomena.

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