Praktikum z molekulového modelingu

E-book

Andrea Morovská Turoňová

The discovery of radioactivity at the turn of the 19th and 20th centuries stimulated the rapid development of nuclear sciences. At the interface between nuclear physics and chemistry, disciplines such as radiochemistry, radiation chemistry and nuclear chemistry were formed.

The aim of the Nuclear Chemistry course which is taught at the PF UPJŠ is to provide basic knowledge, with an emphasis on the general value of the subject. It is important to make available the basics of various methods, techniques and their specifics in the application of nuclear phenomena in chemistry and related fields. Emphasis is also placed on the use of correct terminology, knowledge of the context of relationships and basic principles, supplemented by illustrative concrete cases.

The choice of material is rather difficult, but we count on additional monographs and textbooks to fill in the gaps of these teaching texts.

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Zuzana Jurašeková

Úvod k praktikám k experimentálnym metódam biofyziky

The university textbook titled Laboratory Techniques and Calculations is designed for the first-year students of the bachelor's degree in Biophysics at the Institute of Physics, Faculty of Sciences, P. J. Šafárik University in Košice. The objective is to equip students with fundamental knowledge and practical skills for the work in a chemical laboratory. It is essential for addressing different biophysical issues and experiments that students will have to solve later. The textbook comprises three principal sections: a theoretical part focused on the calculations, a section dedicated to laboratory work, and the last part offers a brief introduction to spectroscopy. The theoretical part summarizes the basic definitions and equations related to the characterization and preparation of solutions and mixtures. The second, most comprehensive part provides guidance and suggestions for safe and efficient practices in a chemical laboratory. The primary focus is on the manipulation of chemical substances and the use of specific small laboratory instruments and equipment. The fundamental laboratory procedure guides for the selected laboratory works are also provided. As part of a short introduction to spectroscopy, students can become familiar with fundamental spectroscopic concepts and principles. UV-VIS absorption spectrophotometry receives special attention, along with a brief introduction to fluorescence. The textbook is supplemented by various practical and theoretical tasks, as well as numerous web links to further explanatory texts and videos.

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Ľubomír Antoni a kol.

In university textbooks, we present the history of data science, basic concepts in artificial intelligence, machine learning, or deep learning. We describe the relationships between data science and other disciplines and summarize the tasks of the data scientist. We present an overview of university subjects in the field of data science, which were created and innovated at Slovak universities within the national project IT Academy - Education for the 21st Century. We present extended subject annotations, application examples and case studies using various methods in the field of data science. University textbooks are intended for students of bachelor's, master's, engineering and doctoral study programs in computer science, but also in non-informatics fields.

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E-book

Karel Saksl

The aim of these study texts is to provide students in the second and third levels of higher education with specific guidance on processing 2D diffraction data, performing phase analysis from X-ray diffraction data, and refining microstructural parameters of identified phases using the Rietveld refinement method.

This guide is designed in the form of real-world tasks from materials research and leads the reader step by step through the processes of processing, evaluating, and interpreting the measured data. For this purpose, freely accessible programs such as Fit2D, QualX, POV-Ray, and GSAS II will be used, as well as a freely downloadable commercial program (Diamond) that allows for task execution in demonstration mode. Phase analysis will be conducted exclusively using the freely distributable crystallographic database Crystallography Open Database (COD).

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E-book

Zuzana Kudličková(ed.)

Proceedings of Abstracts from the Scientific Conference with International Participation Organized on the Occasion of the 50th Anniversary of the Establishment of the Department of Organic Chemistry, Faculty of Science, Pavol Jozef Šafárik University in Košice, held on June 8–10, 2016 in Košice.

The Department of Organic Chemistry was established on February 1, 1966. From its inception, the department’s development prospects have been linked to high-quality scientific research focused on the synthesis of isothiocyanates and the products of their nucleophilic additions. In addition, studies were conducted on the use of cycloaddition, cyclocondensation, and photocyclization reactions of heterocumulenes in the synthesis of heterocycles.

Currently, research at the Department of Organic Chemistry is concentrated on stereoselective syntheses of iminosugars and γ-lactam-β-lactone antibiotics, total synthesis of natural compounds and their analogues possessing a sphingoid structure, research into the synthesis of indole alkaloids from the phytoalexin group, and the synthesis of acetylcholinesterase inhibitors based on acridine and coumarin derivatives.

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Vasyl Cherlinka - Michal Gallay - Yuryi Dmytruk

The textbook is a practical guide to predictive mapping of soil types and properties in R. It bridges digital soil mapping theory with hands-on practice, covering the full workflow from data acquisition and preprocessing to validation and uncertainty quantification. Early chapters introduce the tidyverse ecosystem and the sf and terra packages for spatial data handling. Subsequent parts address modelling of categorical variables (soil types/WRB) and continuous variables (soil organic carbon) using Random Forest, Cubist, and Quantile Regression Forests. Step-by-step code examples show training/testing, feature selection, accuracy metrics, and model interpretation. Reproducibility and cartographic best practice are emphasised. A Slovakia case study demonstrates real-world application while outlining limits and generalisability. The book targets bachelor’s, master’s, and PhD students in geography, geoinformatics, environmental and agricultural sciences, as well as practitioners. Written in English, it fits international courses and mobility programmes.

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Vlasta Demečková - Petra Hradická - Petra Adamková

The learning material for the course Practice in Immunology is based on several years of experience with teaching this subject, but mainly to provide students from the Biology Department at the Faculty of Natural Sciences, UPJŠ in Košice with sufficient theoretical background for practical exercises. It also serves as a scientific diary for detailed recording of all experimental data necessary for preparing laboratory protocols from individual exercises.

In studying biology, it is essential that students thoroughly understand not only the basics of each discipline but also acquire practical skills, including designing scientific experiments, selecting appropriate analytical/investigative techniques up to interpreting and presenting experimental data. The goal of this new publication is therefore to provide master's students with a practical study guide that supports and expands their knowledge about basic immunology principles.

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Mária Vilková - Monika Garberová - Michal Goga

Nuclear Magnetic Resonance (NMR) is currently a widely used analytical tool that finds application in many fields of science and technology. The broadening of its practical use brings with it the necessity to create educational texts appropriate to the given scientific discipline.

This university textbook is intended for students of biology and serves as a supplement to the study materials for the advanced master's course "Biology of Lichens." At the same time, it represents a useful resource for master's and doctoral students involved in research, helping them interpret NMR spectra and present basic theoretical concepts.

The textbook briefly describes the important aspects of each NMR spectroscopic technique without delving excessively into the physical principles of individual methods or complex mathematical analyses. In this edition, the structures of lichen metabolites have been included, which students will isolate, purify, and identify using various analytical methods during practical exercises. An entire chapter is dedicated to a detailed description of solving the NMR spectra of isolated metabolites, with each step in elucidating the structures of both known and unknown metabolites explained in detail. The solved tasks are followed by numerous unsolved examples, including high-resolution 1D and 2D NMR spectra of metabolites, intended to further develop the acquired knowledge and skills of students and doctoral candidates in structure elucidation using NMR spectroscopy.

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Ján Kleban a kolektív

Predkladaný pracovný zošit na praktické cvičenia z cytológie je určený poslucháčom 1. ročníka bakalárskeho štúdia biológie a 1. ročníka bakalárskeho medziodborového štúdia v kombinácii s biológiou na Prírodovedeckej fakulte Univerzity Pavla Jozefa Šafárika v Košiciach. Slúži ako návod, ktorý má študentom uľahčiť prácu a umožniť rýchlejšiu orientáciu v zadanej úlohe. Úprava pracovného zošita do formy protokolov umožňuje študentom zakresliť vlastné pozorovanie a tým stimuluje študentov k presnejšiemu a trvalejšiemu zapamätaniu si precvičovanej úlohy a zároveň umožňuje spätnú kontrolu pedagógom. Počas cvičení sa študenti postupne oboznámia so základnými pojmami optiky, s aplikáciami využívajúcimi mikroskopickú techniku, ale aj so základnými rozdielmi medzi štruktúrou rastlinnej a živočíšnej bunky a ich organelami.

E-book

Miroslava Martinková

This electronic material provides the basic principles of creating a systematic nomenclature of organic compounds, from the simplest hydrocarbons to the more complicated nomenclature of carbohydrates. For some groups of derivatives, alternative ways of generating system names are also mentioned, as well as the most common trivial names that are still in use in the literature and in practice, in some cases being the characteristic (dominant) ones. In the introductory section, the basic rules to be respected when writing names of organic compounds are discussed. This document is intended primarily for interdisciplinary undergraduate and graduate students as support material for the courses Organic Chemistry and Selected Chapters in Organic Chemistry and Biochemistry. In the final section of this document, solved examples are given so that the student can check how the rules for forming the names of organic compounds have been understood.

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E-publication

Denisa Maceková-Monika Václavková-Marek Kvet-Ivana Sotáková

The publication Digiform: A Supporting Application to Digilib – User Guide, Part B presents the Digiform web application as a tool that extends the functionality of the Digilib digital library of formative assessment tools. The application enables the creation and editing of formative assessment tool templates, which can be adapted to the specificities of individual subjects and levels of education and subsequently imported into the Digilib environment for use in the teaching process. The guide provides a detailed description of how to work with the Digiform application, from creating new templates, editing and personalising them, through to their export and implementation in the main Digilib application. Attention is also given to the interconnection with the Digilib Images application, which enables the integration of visual elements into the assessment tools, thereby enhancing their didactic effectiveness and visual appeal. The guide is intended for teachers at all levels of education, student teachers, school administrators, and digital coordinators who are interested in the systematic use of the Digilib digital library to support the implementation of formative assessment, enhance the quality of the educational process, and foster the development of students’ self-assessment and reflective competences.

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Peter Fedoročko a kol. 

Vysokoškolský učebný text Prírodovedeckej fakulty UPJŠ.

E-book

Jozef Strečka

Over the past fifteen years, the course on ’Exactly Solvable Models in Statistical Physics’ has become an indispensable ground of the study programme ’Theoretical Physics’ at Faculty of Science of Pavol Jozef Šafarik University in Košice. At first, the course based on the first edition of this textbook was intended for undergraduate students only, however, I have later prepared follow-up course taught at a postgraduate level on demand of several ambitious students who wished to continue in studying this exciting research field.

It is already more than decade when our students enrolled in the study programme ’Theoretical Physics’ graduate from ’Introduction to Exactly Solvable Models in Statistical Physics’ at a master level and ’Exactly Solvable Models in Statistical Physics’ at a postgraduate level. Of course, it was necessary somehow to rearrange topics for the courses of undergraduate and postgraduate students.

More specifically, a few more challenging topics concerned with exact solutions of 2D Ising model (chapter 3) were moved to a more advanced course intended for the postgraduate students, while an introductory course intended for the undergraduate students was contrarily supplemented with a few new topics requiring the second edition of this textbook.

The second edition of this textbook thus contains a completely new chapter 4 devoted to the exact solution of the Ising model on the Bethe lattice using the method of exact recursion relations, while the chapter 5 was supplemented by exact results for ground state of a few frustrated Heisenberg spin models using the variational method. It is my hope that the next edition of this textbook will come soon and it will involve all topics specifically taught within the postgraduate course as well. 

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Matúš Harminc

Učebný text je určený poslucháčom medziodborového štúdia v kombinácii s matematikou, jednoodborového štúdia matematiky ako aj rozširujúceho štúdia matematiky. Je zameraný na základné poznatky o deliteľnosti celých čísel, kongruenciách a aritmetických funkciách.

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E-book

Vladimír Sedlák

The university textbooks entitled Global Navigation Satellite Systems: GPS, GLONAS, Galileo, Compass present four navigation systems of the GNSS (Global Navigation Satellite Systems): American NAVSTAR GPS, Russian GLONASS, European Galileo and Chinese Compass. The Satellite-Based Augmentation Systems (SBAS) are also briefly explained. They provide regional service in augmenting the reach and support of signals from satellites of the GNSS (GPS, GLONASS, Galileo, Compass). Each satellite navigation system in the frame of GNSS is elucidated in terms of its principles of operation, structure, specificities, applications, and future perspectives.

The university textbook aims to improve the reader’s understanding of the principles and activities of the presented GNSS. The book emphasizes the possibilities of GNSS applications in geodesy and geography. The university textbook constitutes the basic study literature for the class Global Navigation Satellite Systems within the study program Geography and Geoinformatics at the Faculty of Science of the Pavol Jozef Šafárik University in Košice. For a deeper study of the GNSS issue, it is necessary to extend the study materials to include other educational scientific literature dealing with navigation satellite systems and their applications.

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E-book

Martin Orendáč

The textbook is designed to prepare students who will engage in the experimental study of the properties of condensed matter. It demonstrates that a contemporary experimental physicist must not only possess sufficiently detailed knowledge of the physical processes occurring within the object under study but also understand the methods for creating the experimental conditions in which the experiment is conducted. Active knowledge of the functioning of the entire experimental setup can be of fundamental importance in the implementation or potential modification of the measurement methodology used.

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