Praktikum z molekulového modelingu

E-publication

Soňa Király

The Book of Abstracts of The 9th International Conference on Novel Materials Fundamentals and Applications, NFA 2025, contains 46 contributions from the participants of this conference. This congress is primarily focused on novel materials, ranging from theory to practical applications, with the aim of demonstrating how fundamental discoveries can lead to innovative implementations. All contributions are inspiring and professionally prepared.

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E-book

Katarína Štrofeková

Cell Biophysics II is the one semester comprehensive course textbook for PhD students. It encompasses basic principles and mechanisms underlying cell physiology and biophysics with aims:

• General knowledge of the principles of cellular function, including membrane, cytoplasmic and nuclear roles in normal and abnormal conditions.
• In-depth understanding of the mechanisms underlying the cell functions at the molecular and subcellular level.
• Awareness of cell pathologies that lead to specific disease symptoms and phenotypes.
• The ability to apply learned principles to solve new problems (analysis & synthesis).

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E-book

Martin Orendáč

The textbook is designed to prepare students who will engage in the experimental study of the properties of condensed matter. It demonstrates that a contemporary experimental physicist must not only possess sufficiently detailed knowledge of the physical processes occurring within the object under study but also understand the methods for creating the experimental conditions in which the experiment is conducted. Active knowledge of the functioning of the entire experimental setup can be of fundamental importance in the implementation or potential modification of the measurement methodology used.

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E-book

Tomáš Samuely

Today, scanning probe microscopes are standard tools in materials science, physics, chemistry, biology, and engineering. Thousands of these microscopes are in operation worldwide and are at least as common and popular as scanning electron microscopes.

Despite the vast number of newer scanning probe microscopy techniques, classical STM remains a significant and irreplaceable method, widely used, for example, in solid-state research. In this text, we will focus on both traditional and innovative STM techniques that are available and utilized in the laboratories of the Center for Low Temperature Physics in Košice.

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E-book

Pavol Sokol - Ladislav Bačo - Tomáš Bajtoš

In the university textbook, we present the theoretical foundations and technical details of the activities of a forensic investigator. We describe the identification and provision of digital tracks, file system analysis. analysis of various artifacts of the Windows operating system, analysis of the operating memory. The textbook is also supplemented by a chapter devoted to the analysis of malicious code (malware). University textbooks are intended for students of bachelor's, master's, engineering and doctoral study programs in computer science, but also in non-informatics fields.

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E-book

Mária Kožurková

These university textbooks are intended for first-year master's degree students at the Faculty of Natural Sciences of UPJŠ in Košice. The scope and content of the works included in these scripts are primarily based on time and spatial constraints, taking into account the material demands of the tasks.

The aim of these scripts is to teach students basic microbiological techniques and to show them the importance of microorganisms in everyday life and their crucial role in nature. The exercises are designed to enhance students' technical skills and teach them to work according to safety principles.

The text is divided into 13 parts. Each part begins with an introduction to the theory related to the practice topic. The appendix includes a proposal for the preparation of protocols for individual exercises.

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Valéria Skřivánková - Martina Hančová

The publication is focused on discrete random processes, primarily on Markov chains, which have wide application in the field of economics and finance.

The textbook is divided into five chapters, the first of which serves as an introduction to random processes and provides definition, properties and classification of random processes in general. The second chapter discusses Markov chains with discrete time, including valuation of transitions between states and their optimal management. The third chapter focuses on special Markov chains with continuous time and emphasizes construction and solution to the system of Kolmogorov differential equations, which describe the dynamics of the process development. The last two chapters illustrate applications of Markov chains using examples of queuing system modeling and renewal theory.

Besides the explanation of basic terms, definitions and theorems with proofs, this textbook also provides number of solved examples to illustrate the discussed theory. Problem assignments are placed at the end of each chapter, so that readers can test their understanding of the content as they progress through the book. Solutions to all the problems and the list of references are provided at the end of the publication.

This textbook is primarily intented for students majoring in Economics and Financial Mathematics at the Faculty of Science of Pavol Jozef Šafárik University in Košice, and it covers content of the course “Random Proceses 1“ thought there. It might however serve also students from other schools in similar progams or professionals interested in this topic.

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E-book

Peter Paľove-Balang

The text ‘Uptake and transport of mineral substances in plants’ in Slovak language provides a general overview of the uptake and distribution of substances in an easy-to-understand form.

The individual chapters introduce students to the properties of the soil environment, which have a significant influence on the availability of substances, as well as the transport of substances across membranes and over medium and long distances. The text contains the latest findings from the English literature, supplemented by diagrams and graphs created by the author on the basis of his own research or by compiling several sources.

The text is intended primarily for students of a master's degree in biology or ecology and assumes at least a basic knowledge of plant physiology.

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E-book

Jozef Bednarčík (ed.)

The SFEL school is continuation of the Winter Schools of Synchrotron radiation held in 2011, 2013, 2014 and SFEL 2017, 2018 and 2019. All schools of the series were held here, in Liptovský Ján, where our conference venue offers conditions for friendly and creative atmosphere.

The aim of the SFEL 2022 school is to facilitate the growth of a new Slovak research community with high expertise in the area of high-efficiency RTG laser, synchrotron and neutron sources. The SFEL school is designed for efficient transfer of the rapidly developing know-howin these areas to young generation – researchers and university students. The next aim of the SFEL2022 is strengthening of personal connections between the local Slovak research community and actually forming scientific teams of XFEL users, scientific teams of synchrotron or neutron sources users, respectively.

Slovak research community thus can take advantage of the fact that Slovakia is a shareholder of the European XFEL GmbH company in Hamburg, but also makes more efficient use of other closely related scientific facilities, including ILL and ESRF in Grenoble and DESY in Hamburg.

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E-book

Pavol Mártonfi

The university textbook deals with the latest knowledge from the systematics of vascular plants in a clear manner. Vascular plants arose in the Silurian period in the Paleozoic, when the first primitive plants moved from water to dry land, which required evolutionary progress in the morphological and anatomical structure of these plants. During about 420 million years of the existence of vascular plants, several of their main groups have evolved: the spore vascular plants, including the lycopods (branch Lycopodiophyta) and group of ferns and related plants (branch Monilophyta), and the seed plants, including gymnosperms (branch Gymnospermae) and angiosperms ( Angiospermae), which currently dominate among plants. The textbook provides a brief but comprehensive overview of the main groups, orders and families of plants with their description, distribution, main representatives, while also addressing the useful properties of selected species. The work is complemented by an overview of the system of plants by Cronquist, Tachtadžjan, APG and an overview of the families of the Slovak flora, as well as a taxonomic index.

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E-publication
Beáta Valkay ed.
Ivana Slepáková-Andrej Mock a kol.

The textbook EFFUSE – River Landscape, Volume 1: Scientific Education for Everybody, developed within the EFFUSE project, explores the importance of water for living organisms and the specific features of water in the Transcarpathian region. It addresses the issue of water pollution and presents bioindication as an effective method of environmental research. The publication explains how the ecological status of rivers and water quality can be assessed using aquatic plants, insects, fish, and amphibians. It also raises awareness about the microbial composition of water and offers guidance on protecting oneself from waterborne infections. Finally, it highlights the significance of environmental education and awareness in strengthening the relationship between humans and the natural environment.

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E-book

Juraj Černák

A significant part of inorganic chemistry is coordination chemistry, which deals with coordination compounds. Coordination compounds are numerous because they arise from the combination of central atoms, mostly metals, with ligands, and every organic compound is a potential ligand. This is confirmed by a recent report that American scientists M. Brookhart, C. Schauer, and their colleagues from universities in North Carolina and Washington described the preparation of a rhodium complex with methane as a ligand.

This textbook is based on the long-term experience of the author in teaching and testing this subject. The subject is well-covered in several textbooks of varying difficulty in English; their partial list can be found by readers in the list of used literature at the end of this textbook. On the other hand, in Slovak language, coordination chemistry issues are only marginally covered in several textbooks focused more on general inorganic chemistry but lack a comprehensive view on this topic. From this follows the goal of this proposed textbook - to cover the lack of study literature in this area for Slovak language.

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E-book

Karel Saksl

Solving crystal structures is the royal discipline of X-ray crystallography. Its primary task, with the exception of defects, is to describe the atomic structure of the motif that, by its repetition, fills the volume of the entire crystal or crystalline phase. This task is nowadays more or less routine for single-crystal X-ray diffraction, which can locate hundreds to thousands of non-hydrogen atoms in large unit cells. However, in real practice, we often have material available only in powder form instead of single crystals. Solving the atomic structure from its X-ray diffraction data is non-trivial, mainly because the three-dimensional diffraction space of a single crystal is reduced to one dimension by measuring a large number of randomly oriented microcrystals (crystallites). Therefore, the solution itself requires, in addition to proper measurement methodology, the selection of suitable tools, procedures, and strategies that, through optimization, will lead to the solution and refinement of the given crystalline phase. The current limit of this method is approximately 100 non-hydrogen atoms in the asymmetric part of the unit cell, which, however, is sufficient for most inorganic materials.

The goal of these educational texts is to provide students in the second and third levels of university studies with specific guidance on solving crystal structures from powder X-ray diffraction data. These scripts build upon my first monograph and require practical knowledge of its content. Similar to my previous monograph, I offer solved examples without a deep theoretical introduction, demonstrating procedures and strategies leading to the correct solution of crystalline phases using the freely available GSAS-II program. The examples are arranged from simpler to more complex, and the reader will find many useful pieces of information in the literature references as well as in the comments below the line. Part of these scripts are data intended for your individual practice of the described procedures. 

Karel Sakls

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E-book

Adriana Zeleňáková - Zuzana Ješková - Adela Kravčáková  et al. (eds.)

The proceedings contain abstracts of contributions from participants of the 10th Czech-Slovak Student Scientific Conference in Physics, which took place on May 2–3, 2019, at the Faculty of Science, Pavol Jozef Šafárik University in Košice.

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E-book

Zuzana Kudličková Monika Tvrdoňová Ján Elečko
This elektronic material provides practical guidance for determining the structure of organic compounds using nuclear magnetic resonance (NMR) spectroscopy, infrared (IR) spectroscopy, and mass spectrometry (MS). The publication is intended primarily for single-discipline undergraduate and interdisciplinary undergraduate students in chemistry as a supplementary material for the course Methods of Structure Determination – Spectroscopic Methods. The text is divided into four parts: NMR, IR, MS, and exercises on combined structural analysis. Each section includes a brief theoretical introduction, practical tips for spectrum interpretation, solved examples, and especially unsolved exercises that allow students to practice analyzing real spectra. The material supports the development of analytical thinking and the ability to unambiguously determine the structure of unknown compounds. The publication was created as a teaching aid for seminars. Its goal is to help students effectively understand the combination of spectroscopic methods and their application in the structural analysis of organic compounds.
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E-book

Nataša Tomášková

Selected tasks and problems from biochemistry – metabolism follow biochemistry lectures on metabolism and individual metabolic pathways for students of the second and third year of the bachelor’s degree in the fields of chemistry, biology and their combinations with other fields. Scripts provide an opportunity to better understand the lectured subject matter of metabolism through the solution of tasks and problems as serve as a basis for one-hour exercises. The scripts are divided thematically into eleven chapters, and each chapter contains 10 tasks and 7 problems. At the beginning of the chapters there is a short description and explanation of the given metabolic pathway. However, when solving the tasks, the student must focus mainly on the curriculum that was presented on the given topic in the lecture. Subsequently, at the end of chapter, answers to problems are also presented. These scripts are intentionally accessible only in electronic form. The reason is the effort to continuously update and modernize individual tasks.

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